PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023898569.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family C3H
Protein Properties Length: 452aa    MW: 49133.1 Da    PI: 7.628
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023898569.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.25.2e-07129149526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C+f+ + G C yG++C++ H+
  XP_023898569.1 129 VCNFWIQ-GNCGYGEKCRYLHS 149
                     7******.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    
MDVDSGSKRV FQRLGGPVEN SKNYHHGNNN NSSQIQKVCY HWRAGNCNRH PCPYLHGELP  60
PPPNGSSKRG GGGGGGFSDD YSSSSSSFSG PRSSRPNYSN SWGRAHGGGG GGNRTLTRNN  120
KPTEKVSKVC NFWIQGNCGY GEKCRYLHSW STGDNFSMVA QLEGHLKVVN GIALPSDSNS  180
LYTGSKDETV RVWDCTTGQC KAVIQLGGEV GCMINEGHWV FVGIPNAVKA WNTLTNSELN  240
LNGPVGQVYA MVVGNDFLFA GIQDGSILAW KFNVVTNTFE PAASLTGHTL GVVSLVVGAN  300
RLYSGSMDCS IRVWNLETLQ CVQTLKEHSS VVMSVLCWDQ FLLSCSLDKT IKVWVATESG  360
NLEVTYTHNE DHGLLTLCGM HDLESKPILL CSCNDNTVHL YDLPSFSERG KIYAKQEVRA  420
IQMGPGGLFF TGDGAGQVKV WRWLAESTAT TR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.10.0C3H family protein