PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023898530.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family C3H
Protein Properties Length: 392aa    MW: 43426.5 Da    PI: 7.0514
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023898530.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.22.8e-08141161526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C++f++ G Ck Gd+C FaHg
  XP_023898530.1 141 ACPDFRK-GNCKKGDSCEFAHG 161
                     7******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    
MMLGEAHHPN RTVHVPPWPT QDDPTAEIYS PYSLTSLSVN SDGNGTTGAG DYSPYYLQDV  60
MTALQRYLPS NEADLDLDSD SGREADAPVD AYSCDHFRMF EFKVRRCARG RSHDWTECPY  120
AHPGEKARRR DPRKYHYSGT ACPDFRKGNC KKGDSCEFAH GVFECWLHPA RYRTQPCKDG  180
TSCRRRVCFF AHTPEQLRVL PPQQMQSPTP RSTVVNSVDS YDGSPLRHAI EAAKTLPFLS  240
SPSTISPPAT PPAADSPPMS PMTQSLSRSL GSGSINEVVA SLRNLQLEKV KSLPSSWNVP  300
GYGSPRGSTL RPGFCSMPTT PTRAPTRAGM GYFDVWDQGC EEETPMERVE SGRGLRAKMF  360
EKLREENSLD RVDPGPSTTS APDVGWVSEL VK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.11e-129C3H family protein