PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023897611.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 341aa MW: 38111.7 Da PI: 6.6203

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023897611.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.6	4.5e-05	260	282	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C+++F ++ +L rH tH XP_023897611.1 260 YACQFCDRRFVHRKDLIRHHLTH 282 89******************999 PP
2	zf-C2H2	20.7	1.1e-06	290	315	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 + Cp Cgks++rk++L rH ++ H XP_023897611.1 290 FYCPfdTCGKSYRRKDHLSRHVKNkH 315 78*********************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence
MSNSGFTRDE TLLEDLFNQI TNFDPQLYQY PSALDEFSND SGQAHHHDSV PSDEVLSSFI 60 SDAGTVESTK FEGGQTVWPD DHCCIEQTYE TYDGSVPPTS LSPFSGQPCS DLVLPAQGDG 120 RSIDTQLRPR GLTTNDVSQL HCLSPSIHVW AQDSYTVGDR GDNQDVPDFS LAQDFDYLAI 180 PGNSHHSRRT SAGHASAPRL WTPGSKSAAS AVHVRPASEA GTASTGLYRC KHDDCQLVFD 240 TLSKLRHHSR YHTPNGERKY ACQFCDRRFV HRKDLIRHHL THDPVYRPSF YCPFDTCGKS 300 YRRKDHLSRH VKNKHFGASN STSPLSVRSP VLDANTNWQT N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.2	8e-09	C2H2 family protein