PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023897610.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
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Family | C2H2 | ||||||||
Protein Properties | Length: 213aa MW: 23627.2 Da PI: 9.8862 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20.5 | 1.3e-06 | 120 | 144 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ +Cgk F+++ +L +H+r H XP_023897610.1 120 YRCTwdNCGKGFPTSNDLSHHQRYH 144 99*********************99 PP | |||||||
2 | zf-C2H2 | 16 | 3.5e-05 | 151 | 173 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cgk F ++ +++rH++tH XP_023897610.1 151 HICETCGKDFLHRKDMRRHQNTH 173 68********************9 PP | |||||||
3 | zf-C2H2 | 13.9 | 0.00016 | 185 | 209 | 4 | 23 |
T..TTT..EEESSHHHHHHHHHH.T CS zf-C2H2 4 p..dCg..ksFsrksnLkrHirt.H 23 C k +srk++L rH+rt H XP_023897610.1 185 AeeMCRgkKGYSRKDHLARHMRTkH 209 5557888899*************99 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence |
MCQCCNHERS KVAYATPSPQ GPTSAPAEWL NGMSGNINWQ LVQSTLGPGI NNWNRDVRLP 60 GEGYGAAAAS SSSNNNNDSN NYLQLPITPM AAPSPSASSV TSSARTLTKR NRDEMTQGAY 120 RCTWDNCGKG FPTSNDLSHH QRYHASGRRP HICETCGKDF LHRKDMRRHQ NTHETGSASK 180 RHFCAEEMCR GKKGYSRKDH LARHMRTKHA GGR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G06634.2 | 7e-08 | C2H2 family protein |