PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023897024.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

GRF

Protein Properties

Length: 495aa MW: 53466.3 Da PI: 9.2162

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023897024.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.5	1.3e-24	154	197	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRC ++v++++k+CErH+hrgr+rsrk++e XP_023897024.1 154 DPEPGRCRRTDGKKWRCGKNVVPDQKYCERHMHRGRQRSRKPVE 197 79***************************************998 PP
2	WRC	69.4	4.6e-22	376	413	2	39
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrs 39 epgrCrRtDGKkWRCsr+v++++k+CE H+hrg +++ XP_023897024.1 376 LEPGRCRRTDGKKWRCSRDVVPDQKYCEQHMHRGAKKR 413 69********************************8776 PP
3	QLQ	42.8	1.6e-15	87	121	3	37
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +T++Ql++L +Q+l+yK+Laa +PvP +L+ +++k XP_023897024.1 87 LTPTQLHELQQQALIYKHLAAALPVPLHLVIPVWK 121 8********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 495 aa Download sequence
MEALLPHQSG GGGPQKLFGM ASTVKVEAVK EIAQEEAQQP WIKLGLGIGA SCSSSCDEAQ 60 NPVTIAIGSS SSCSCEDTQR HEKPVLLTPT QLHELQQQAL IYKHLAAALP VPLHLVIPVW 120 KSVASCFGPA IYDRYPSFIG YFSPKGFDYR TMMDPEPGRC RRTDGKKWRC GKNVVPDQKY 180 CERHMHRGRQ RSRKPVEAFK IASPSESTPS NKLTDKLAEL KTKHANSPAV GLQLMTPSCT 240 NSANSHSTST STTTNTNTPS SNIGSKKNEI CDAVTTTRTP ISATTVPATV TASITTTPAT 300 APTLTAKSNN KIDHNTDRKD MSGNYACYNA TMKSSRKRFN NINIGMSMGL DFSPKSVLQV 360 QGCSGACFGD QNGNDLEPGR CRRTDGKKWR CSRDVVPDQK YCEQHMHRGA KKRVAASQTI 420 SVPPVSTAAS HRAPPYCSTN IPNKAACAIP NTNLSISIRA IPQLIHNDEK STSSSSDTTI 480 TDTSIAANEY GSVSS

Sequence ? help Back to Top

Protein Sequence Length: 495 aa Download sequence

MEALLPHQSG GGGPQKLFGM ASTVKVEAVK EIAQEEAQQP WIKLGLGIGA SCSSSCDEAQ  60
NPVTIAIGSS SSCSCEDTQR HEKPVLLTPT QLHELQQQAL IYKHLAAALP VPLHLVIPVW  120
KSVASCFGPA IYDRYPSFIG YFSPKGFDYR TMMDPEPGRC RRTDGKKWRC GKNVVPDQKY  180
CERHMHRGRQ RSRKPVEAFK IASPSESTPS NKLTDKLAEL KTKHANSPAV GLQLMTPSCT  240
NSANSHSTST STTTNTNTPS SNIGSKKNEI CDAVTTTRTP ISATTVPATV TASITTTPAT  300
APTLTAKSNN KIDHNTDRKD MSGNYACYNA TMKSSRKRFN NINIGMSMGL DFSPKSVLQV  360
QGCSGACFGD QNGNDLEPGR CRRTDGKKWR CSRDVVPDQK YCEQHMHRGA KKRVAASQTI  420
SVPPVSTAAS HRAPPYCSTN IPNKAACAIP NTNLSISIRA IPQLIHNDEK STSSSSDTTI  480
TDTSIAANEY GSVSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	1e-25	GRF family protein