PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023896837.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 221aa MW: 25062.5 Da PI: 6.5347 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 66.3 | 3.1e-21 | 22 | 63 | 8 | 49 |
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +rqvtfskRr+g++KKA ELSvL +ae+avi++s+++k+y + XP_023896837.1 22 QRQVTFSKRRAGLFKKAGELSVLSGAEIAVIVISKKDKVYCF 63 7**************************************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence |
MVMPKKTQGR QKVEMKELDG NQRQVTFSKR RAGLFKKAGE LSVLSGAEIA VIVISKKDKV 60 YCFGHPNVET ILNRYLTGGD DATLAESSQE HVAVNEFNMQ YDEAQRELAM EKNRLKEIEE 120 DVKMKKMSGS GGFWWDNPLD ENMGLEEMQH YLWSLQEARK KVAAKLDERM SMRMGKSSLL 180 SSMDMKVDVG NNNFVYPNLN GGNNNGGVFD SHVYGFELGQ Y |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 6e-33 | M-type_MADS family protein |