PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023896781.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

GRF

Protein Properties

Length: 573aa MW: 61987.9 Da PI: 8.6942

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023896781.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.2	1.6e-24	196	239	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrC+RtDGKkWRCsr+v +++k+CErHlhrgr rsrk++e XP_023896781.1 196 DPEPGRCKRTDGKKWRCSRDVAPDHKYCERHLHRGRPRSRKPVE 239 79***************************************987 PP
2	QLQ	55.2	2.1e-19	135	168	2	35
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqai 35 +FT aQ+ +L++Q+++yKy++a++P+PpeLl + XP_023896781.1 135 PFTSAQWRELERQAMIYKYMMASAPIPPELLIPT 168 8*****************************9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 573 aa Download sequence
MIRMDSLDFV NKEAKRESSS VKLQSSNIEE SFTNKVIMFH HGNHHRPFSS SSSPSPSYEV 60 KVGDGGDGPT RKNTSIISND TYDVVVGGSG SAVAATQQHT SGGAGVRTVQ PFDTATTPHT 120 ASKSPVRMAA SLGFPFTSAQ WRELERQAMI YKYMMASAPI PPELLIPTCR NTSDPAASHS 180 HLGGSGFNLR LSNSTDPEPG RCKRTDGKKW RCSRDVAPDH KYCERHLHRG RPRSRKPVEI 240 HTKNENIVNN NNSSNNNNNN IIKRTRREDY HVLPTTSPVT VAYPNPTINT NGFPSQFLGP 300 AQPYHQPTVA SHKEPWCLDW MVKGAHVPTA TYDQQWYPMM ETKMGFTSGN SFSNTNAPVF 360 KQRYAEGPLN LNLYECFRNY EDSRNKDCAL SFNSDMVSTQ KPDTGTTRGF IDAWSNSMTQ 420 ENIANSSTMC SVSPNGRLSP SSLTLSVGGG NSIGEEMGKF PMGLGLFGRD QSNDNGTKSH 480 LTNWLTPASS VASTLGGPLA EVLRPSIAGA ASNSSSPIAG NGDLGSSPVT MVSSPSGVLQ 540 RTLPSLSDSS GNSSSLTIGS SAVNPEMALL WLN

Sequence ? help Back to Top

Protein Sequence Length: 573 aa Download sequence

MIRMDSLDFV NKEAKRESSS VKLQSSNIEE SFTNKVIMFH HGNHHRPFSS SSSPSPSYEV  60
KVGDGGDGPT RKNTSIISND TYDVVVGGSG SAVAATQQHT SGGAGVRTVQ PFDTATTPHT  120
ASKSPVRMAA SLGFPFTSAQ WRELERQAMI YKYMMASAPI PPELLIPTCR NTSDPAASHS  180
HLGGSGFNLR LSNSTDPEPG RCKRTDGKKW RCSRDVAPDH KYCERHLHRG RPRSRKPVEI  240
HTKNENIVNN NNSSNNNNNN IIKRTRREDY HVLPTTSPVT VAYPNPTINT NGFPSQFLGP  300
AQPYHQPTVA SHKEPWCLDW MVKGAHVPTA TYDQQWYPMM ETKMGFTSGN SFSNTNAPVF  360
KQRYAEGPLN LNLYECFRNY EDSRNKDCAL SFNSDMVSTQ KPDTGTTRGF IDAWSNSMTQ  420
ENIANSSTMC SVSPNGRLSP SSLTLSVGGG NSIGEEMGKF PMGLGLFGRD QSNDNGTKSH  480
LTNWLTPASS VASTLGGPLA EVLRPSIAGA ASNSSSPIAG NGDLGSSPVT MVSSPSGVLQ  540
RTLPSLSDSS GNSSSLTIGS SAVNPEMALL WLN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	8e-35	GRF family protein