PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023896780.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

GRF

Protein Properties

Length: 574aa MW: 62058.9 Da PI: 8.6942

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023896780.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.2	1.6e-24	197	240	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrC+RtDGKkWRCsr+v +++k+CErHlhrgr rsrk++e XP_023896780.1 197 DPEPGRCKRTDGKKWRCSRDVAPDHKYCERHLHRGRPRSRKPVE 240 79***************************************987 PP
2	QLQ	55.2	2.2e-19	136	169	2	35
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqai 35 +FT aQ+ +L++Q+++yKy++a++P+PpeLl + XP_023896780.1 136 PFTSAQWRELERQAMIYKYMMASAPIPPELLIPT 169 8*****************************9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 574 aa Download sequence
MIRMDSLDFV NKEAKRESSS VKLQSSNIEE SFTNKVIMFH HGNHHRPFSS SSSPSPSYEV 60 KVGDGGDGPT RKNTSIISND TYDVVVGGSG SAVAATQQHT SGGAGVRTVQ PFDTATTPHT 120 ASKSPAVRMA ASLGFPFTSA QWRELERQAM IYKYMMASAP IPPELLIPTC RNTSDPAASH 180 SHLGGSGFNL RLSNSTDPEP GRCKRTDGKK WRCSRDVAPD HKYCERHLHR GRPRSRKPVE 240 IHTKNENIVN NNNSSNNNNN NIIKRTRRED YHVLPTTSPV TVAYPNPTIN TNGFPSQFLG 300 PAQPYHQPTV ASHKEPWCLD WMVKGAHVPT ATYDQQWYPM METKMGFTSG NSFSNTNAPV 360 FKQRYAEGPL NLNLYECFRN YEDSRNKDCA LSFNSDMVST QKPDTGTTRG FIDAWSNSMT 420 QENIANSSTM CSVSPNGRLS PSSLTLSVGG GNSIGEEMGK FPMGLGLFGR DQSNDNGTKS 480 HLTNWLTPAS SVASTLGGPL AEVLRPSIAG AASNSSSPIA GNGDLGSSPV TMVSSPSGVL 540 QRTLPSLSDS SGNSSSLTIG SSAVNPEMAL LWLN

Sequence ? help Back to Top

Protein Sequence Length: 574 aa Download sequence

MIRMDSLDFV NKEAKRESSS VKLQSSNIEE SFTNKVIMFH HGNHHRPFSS SSSPSPSYEV  60
KVGDGGDGPT RKNTSIISND TYDVVVGGSG SAVAATQQHT SGGAGVRTVQ PFDTATTPHT  120
ASKSPAVRMA ASLGFPFTSA QWRELERQAM IYKYMMASAP IPPELLIPTC RNTSDPAASH  180
SHLGGSGFNL RLSNSTDPEP GRCKRTDGKK WRCSRDVAPD HKYCERHLHR GRPRSRKPVE  240
IHTKNENIVN NNNSSNNNNN NIIKRTRRED YHVLPTTSPV TVAYPNPTIN TNGFPSQFLG  300
PAQPYHQPTV ASHKEPWCLD WMVKGAHVPT ATYDQQWYPM METKMGFTSG NSFSNTNAPV  360
FKQRYAEGPL NLNLYECFRN YEDSRNKDCA LSFNSDMVST QKPDTGTTRG FIDAWSNSMT  420
QENIANSSTM CSVSPNGRLS PSSLTLSVGG GNSIGEEMGK FPMGLGLFGR DQSNDNGTKS  480
HLTNWLTPAS SVASTLGGPL AEVLRPSIAG AASNSSSPIA GNGDLGSSPV TMVSSPSGVL  540
QRTLPSLSDS SGNSSSLTIG SSAVNPEMAL LWLN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	8e-35	GRF family protein