PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023896625.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

bHLH

Protein Properties

Length: 425aa MW: 48578.2 Da PI: 6.3664

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023896625.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.6	4.7e-13	232	283	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P + + ++ + a+i A++++k+L+ XP_023896625.1 232 QRMTHIAVERNRRRQMNDHLNVLRSLMPAS---YIQRGDQASIIGGAIDFVKELE 283 79**************************...9****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence
MECWPLRERE RDIEFKAYCN NYCLAVMERL QGPMNPCFFG DHSDLGCLEQ EFVTTESLKI 60 EEEAAHFSNS MLEDKMPFLQ MLQSVGSPHF LPFKEPSFQT LLRLQHLKKP CEVYTYFPEM 120 ETQIQALELE SCVTNDIVEL HSPMKSETMH IQHPHSASYL EATVSSECNQ EKPNSAEKHC 180 IESNSGSPPP WANPQSWPKH TQFSKSLPIV TRERKKRKRA RPTKNKEEVE NQRMTHIAVE 240 RNRRRQMNDH LNVLRSLMPA SYIQRGDQAS IIGGAIDFVK ELEQLLHSLE AQKRMRKNKE 300 GNESSTVVPS DGFFILPQCR IGSDEGNCGE EVKAENKSEV AEIEVTVIQT HVNLKIHSQR 360 RPGQLLKAIV ALEDLRLTVL HLNITSSESS VLYSFNLKME DECKLGSADE IASKVHQIFS 420 LINGS

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence

MECWPLRERE RDIEFKAYCN NYCLAVMERL QGPMNPCFFG DHSDLGCLEQ EFVTTESLKI  60
EEEAAHFSNS MLEDKMPFLQ MLQSVGSPHF LPFKEPSFQT LLRLQHLKKP CEVYTYFPEM  120
ETQIQALELE SCVTNDIVEL HSPMKSETMH IQHPHSASYL EATVSSECNQ EKPNSAEKHC  180
IESNSGSPPP WANPQSWPKH TQFSKSLPIV TRERKKRKRA RPTKNKEEVE NQRMTHIAVE  240
RNRRRQMNDH LNVLRSLMPA SYIQRGDQAS IIGGAIDFVK ELEQLLHSLE AQKRMRKNKE  300
GNESSTVVPS DGFFILPQCR IGSDEGNCGE EVKAENKSEV AEIEVTVIQT HVNLKIHSQR  360
RPGQLLKAIV ALEDLRLTVL HLNITSSESS VLYSFNLKME DECKLGSADE IASKVHQIFS  420
LINGS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	214	219	RKKRKR
2	233	244	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46810.1	3e-87	bHLH family protein