PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023896327.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C3H

Protein Properties

Length: 484aa MW: 53583.4 Da PI: 6.6434

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023896327.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.1	2.7e-07	166	185	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C f+ + GtC yGd+C++ H+ XP_023896327.1 166 CEFWVQ-GTCVYGDQCPYLHS 185 ****.***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence
MEIKIARRGP QGKESSVFDR LGAGQGGHLN NSSNKICKFW LSGRCLKNPC RFAHSETPDV 60 ATIHSPRQTP YYPHSSNALV SNTWRRAPRN SQNVQVKVVN HKYSENVPGK SESDLEDIKK 120 KSPELVESIS ESSSECSVVE NDSILENVVE EKPLEHVPKK TTEMVCEFWV QGTCVYGDQC 180 PYLHSWFRGD KFKRLAELQG HNKAVNGIAL PLRCNKLCSG SSDGTIRLWD CHTGQSTNVI 240 NLGGEVGSVC SEGPWLFVGM PNVVKVWNTK SGAEYNLNGS VGQVNALESV YNLLFAGVED 300 GVILAWKGTY ETNHTFQLAA TLKGHTHGIT SLVVGGGNRL YSGSKDHTIR VWDHENWQCI 360 MTLNGHDDVV KSLMCWDKYL FSGSLDCTIK VWASTDDGNL EVIYSHSEEQ GILALTGMTD 420 PDIKPILYCS CSNKSVHLYE LPTFTDRGRL FAKQEVQTLQ IGPGGLFFTG DQSGLLTVYT 480 WLAD

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence

MEIKIARRGP QGKESSVFDR LGAGQGGHLN NSSNKICKFW LSGRCLKNPC RFAHSETPDV  60
ATIHSPRQTP YYPHSSNALV SNTWRRAPRN SQNVQVKVVN HKYSENVPGK SESDLEDIKK  120
KSPELVESIS ESSSECSVVE NDSILENVVE EKPLEHVPKK TTEMVCEFWV QGTCVYGDQC  180
PYLHSWFRGD KFKRLAELQG HNKAVNGIAL PLRCNKLCSG SSDGTIRLWD CHTGQSTNVI  240
NLGGEVGSVC SEGPWLFVGM PNVVKVWNTK SGAEYNLNGS VGQVNALESV YNLLFAGVED  300
GVILAWKGTY ETNHTFQLAA TLKGHTHGIT SLVVGGGNRL YSGSKDHTIR VWDHENWQCI  360
MTLNGHDDVV KSLMCWDKYL FSGSLDCTIK VWASTDDGNL EVIYSHSEEQ GILALTGMTD  420
PDIKPILYCS CSNKSVHLYE LPTFTDRGRL FAKQEVQTLQ IGPGGLFFTG DQSGLLTVYT  480
WLAD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25440.1	1e-130	C3H family protein