PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023896080.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 723aa MW: 80664.1 Da PI: 6.7796

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023896080.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.4	1.4e-06	593	617	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++Cp Cg+ F+r ++LkrH rtH XP_023896080.1 593 HSCPipMCGRLFKRLEHLKRHVRTH 617 78**********************9 PP
2	zf-C2H2	25.9	2.5e-08	623	645	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+ksFsr++nL +H rtH XP_023896080.1 623 YTCTLCTKSFSRSDNLAQHRRTH 645 9*********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 723 aa Download sequence
MLPPAQQQQQ QQQQHRTVAP ETFLLEQGAQ QSLTQDSIVA LQQVDNLKYF LISAPVDWSP 60 DQYIRRFLLP TGEYVSCVLW SNLFHISGTD IVRCLAFRFQ AFGRPVKNSK KFEEGIFSDL 120 RNLKSGTDAS LEEPKSPFLD FLYKNNCIRT QKKQKVFYWY SVPHDRLFLD ALERDLKREK 180 MGQEATTMAV SEPALSFEFD SSQSLFEQLT KAQQNEQASS ALNPQPQSMP PSHSSSPVLR 240 AADSMPPPSM FPSQQMPPST MPQASMPPVM QDEHLTQMPT YSQMATPMPP MPSQIHRTRE 300 QSANPVFDRN GFPLSQLGNR HSSMPAYMEY SPAPSFVSSH FEDYSQRGVS FEPLTPPQHG 360 MPAEPAYIAN EDTGLYTAIP DANMQQSFNP LSAVPLNLAG AHYPSMARHQ SQQAYSVLDG 420 SPTYKQRRRQ SSLTNCISAS GASSGGVAAA HAVYRPSDLR RSMSSSVVPQ AIPEAQEVTT 480 YHDSPTSMHT SHLPHNLTGD HKELFGLSRH GTPLSALDAS SDVAEPPNAH AHPMSANHVR 540 PEQQYASYRS SPGLDYRGGP LQQHGVHRSV SGPFRRARSA TVSELGPYNT KSHSCPIPMC 600 GRLFKRLEHL KRHVRTHTQE RPYTCTLCTK SFSRSDNLAQ HRRTHETSAD GTAPSEEEMM 660 EEQDDAIEPL DELPNVGEPS YHPIDMSTGS SMHVSMPSHV DMRSLAQTEM GPPHHMVHTG 720 DYQ

Sequence ? help Back to Top

Protein Sequence Length: 723 aa Download sequence

MLPPAQQQQQ QQQQHRTVAP ETFLLEQGAQ QSLTQDSIVA LQQVDNLKYF LISAPVDWSP  60
DQYIRRFLLP TGEYVSCVLW SNLFHISGTD IVRCLAFRFQ AFGRPVKNSK KFEEGIFSDL  120
RNLKSGTDAS LEEPKSPFLD FLYKNNCIRT QKKQKVFYWY SVPHDRLFLD ALERDLKREK  180
MGQEATTMAV SEPALSFEFD SSQSLFEQLT KAQQNEQASS ALNPQPQSMP PSHSSSPVLR  240
AADSMPPPSM FPSQQMPPST MPQASMPPVM QDEHLTQMPT YSQMATPMPP MPSQIHRTRE  300
QSANPVFDRN GFPLSQLGNR HSSMPAYMEY SPAPSFVSSH FEDYSQRGVS FEPLTPPQHG  360
MPAEPAYIAN EDTGLYTAIP DANMQQSFNP LSAVPLNLAG AHYPSMARHQ SQQAYSVLDG  420
SPTYKQRRRQ SSLTNCISAS GASSGGVAAA HAVYRPSDLR RSMSSSVVPQ AIPEAQEVTT  480
YHDSPTSMHT SHLPHNLTGD HKELFGLSRH GTPLSALDAS SDVAEPPNAH AHPMSANHVR  540
PEQQYASYRS SPGLDYRGGP LQQHGVHRSV SGPFRRARSA TVSELGPYNT KSHSCPIPMC  600
GRLFKRLEHL KRHVRTHTQE RPYTCTLCTK SFSRSDNLAQ HRRTHETSAD GTAPSEEEMM  660
EEQDDAIEPL DELPNVGEPS YHPIDMSTGS SMHVSMPSHV DMRSLAQTEM GPPHHMVHTG  720
DYQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	2e-06	C2H2 family protein