PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023895609.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 352aa MW: 39124.9 Da PI: 6.8738

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023895609.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.1	1.3e-15	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd l+ +++q G+g +W + ++++g++R++k+c++rw++yl XP_023895609.1 14 KGPWSPEEDATLKAYIEQNGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	35.4	2.5e-11	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eE+ ++ + G++ W+ Ia ++ gRt++++k++w++ XP_023895609.1 69 GGFSEEEENIICSLYVSIGSR-WSIIAGQLP-GRTDNDIKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence
MGRAPCCDKA NVKKGPWSPE EDATLKAYIE QNGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEENIIC SLYVSIGSRW SIIAGQLPGR TDNDIKNYWN TRLKKKLLGK 120 QRKEQQAQAQ AQAHAQAQAR RAKQEMKRES YENFMVPGVM NQSPYWPVEL PVAAPIVCAA 180 QYPPPLEDQA ALTNFLIKIG GRFSENHQQP NLTTTTTDFQ YPIDNHIISS PQDQLYANSM 240 SMLTSSTTTN SVGSTCTQLT NMVQGLENFP CEVELGYNNP QQQLNGLEGF YGMDMVNAST 300 AGTTTSSSCE SASWGDISSL VNVYPPLVSD YEGTPQPQDS AFGDLSYFRR IQ

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence

MGRAPCCDKA NVKKGPWSPE EDATLKAYIE QNGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEENIIC SLYVSIGSRW SIIAGQLPGR TDNDIKNYWN TRLKKKLLGK  120
QRKEQQAQAQ AQAHAQAQAR RAKQEMKRES YENFMVPGVM NQSPYWPVEL PVAAPIVCAA  180
QYPPPLEDQA ALTNFLIKIG GRFSENHQQP NLTTTTTDFQ YPIDNHIISS PQDQLYANSM  240
SMLTSSTTTN SVGSTCTQLT NMVQGLENFP CEVELGYNNP QQQLNGLEGF YGMDMVNAST  300
AGTTTSSSCE SASWGDISSL VNVYPPLVSD YEGTPQPQDS AFGDLSYFRR IQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49690.1	1e-76	MYB family protein