PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023895176.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family ARF
Protein Properties Length: 537aa    MW: 60349.2 Da    PI: 7.737
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023895176.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.91.6e-22126227199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae++       + +++  ++l  +d++  sW++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   +++
  XP_023895176.1 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldysM-QPPA-QELGARDLHDSSWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI--RDE 216
                     99*****************************954.5444.38************************************************..456 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_023895176.1 217 KSQLLLGIRRA 227
                     77789*99997 PP
2Auxin_resp123.91.1e-40252334183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+++YnPras+seFv++++k++ka++ +vs+GmRf+m+fete+s  rr++Gt++g+sdld+vrW+nS+Wr+L+
  XP_023895176.1 252 AAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYAQVSLGMRFRMMFETEESGVRRYMGTITGISDLDTVRWKNSQWRNLQ 334
                     79*******************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    
MKVPQNGFLP NSGEGEKKSI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE  60
TDFIPNYPNL PSKLICMLHN VTLHADPETD EVYAQMTLQP VTKYDKEALL ASDMGLKQSR  120
QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDYSMQ PPAQELGARD LHDSSWTFRH  180
IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKSQL LLGIRRANRQ QPALSSSVIS  240
SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVIPLA KYNKAMYAQV SLGMRFRMMF  300
ETEESGVRRY MGTITGISDL DTVRWKNSQW RNLQVGWDES TAGERPSRVS IWEIEPVVTP  360
FYICPPPFFR PKFPRQPGMP DDESDIENAF KRAMPWLGDE FGVKDAPSSI FPGLSLVQWM  420
SMQQNNQFSA AQSGLFPSMV SSNGLHNNLN ADDPSKLLSF QAPAMSASNL QFNKANPQNL  480
VSQLQQPPVA WPQQQHPQQL LQNPNSQQRQ MQHQELHQLS QQQQQQQVQQ QQPQQQQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0ARF family protein