PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023893931.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family C3H
Protein Properties Length: 334aa    MW: 37243.4 Da    PI: 8.6713
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023893931.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH322.1e-10161181525
                     --SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                      C+++ +tG+C +Gd+CkF H
  XP_023893931.1 161 VCKDYKQTGFCGFGDSCKFLH 181
                     7******************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    
MADVAPPTFK KRVNKNIRKR LATPPPATSD SPSDYTTDDD ENEPGVRVKR RRTEGLQTTR  60
PTVQTPQDLS KSTKFAADAS TTIAVTDDAT RTTHWDDETA RPTTTTNNNL TEPSNGTYRG  120
TSTYGTFITR SRDAAPRPVG PVRGAASNVR QITVTDFAPD VCKDYKQTGF CGFGDSCKFL  180
HAREDYKQGW QLDKEWESAG VPGKDKKPPS KDKQQQDEQD EEEKLLASIP FKCIICREAY  240
TRPVRTRCGH YFCEKCAMTR YMKEKKKACA NCGADTNGTF NAARKLSELL ERKRRRVEEA  300
KLRGEEVDED GEATAGGGQV EVKSRNHDGD VKKG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1292296RKRRR
2293297KRRRV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.13e-40C3H family protein