PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023891811.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
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Family | ERF | ||||||||
Protein Properties | Length: 258aa MW: 28586.1 Da PI: 5.1057 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.9 | 5.3e-18 | 72 | 122 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + +++Wv+e+r+p++ ++r++lg++ t+e+Aa+a++ a++ l+g XP_023891811.1 72 PVYRGVRKRN-KNKWVCEVREPKK---KTRIWLGTYPTPEMAARAHDVAALFLRG 122 68*****888.7*********854...6*************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence |
MNIFSQYSDP YPFGSNSFSF DKAETSSLSD AGSGTSASTH KGARYSDDEV ILASRTPKKC 60 AGRRVFKETR HPVYRGVRKR NKNKWVCEVR EPKKKTRIWL GTYPTPEMAA RAHDVAALFL 120 RGKSACLNFA DSAWRLRMPA SKDAMDIRRA AAEAAEAFRP REFGGECGVG RGDDDEEVKN 180 CEEVLGSCGE SAVVEKKASV QENVVYFDEE ELYDMPGLLV NMAEGLLISP PPCVGDSNSI 240 DWDDMEIDAQ LSLWSFGV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 78 | 95 | RKRNKNKWVCEVREPKKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25480.1 | 3e-60 | ERF family protein |