PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023891540.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C3H

Protein Properties

Length: 337aa MW: 37618.4 Da PI: 7.8613

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023891540.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.6	1.8e-07	82	106	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+ C f + G C G+ Ck+aHg XP_023891540.1 82 YKTKMCTSFIA-GMCTKGSDCKYAHG 106 9********.***********8 PP
2	zf-CCCH	19.6	1.7e-06	147	166	6	25
-SGGGGTS.--TTTTT-SS-S CS zf-CCCH 6 CrffartG.tCkyGdrCkFaH 25 C+ f G +C+yGdrC+F H XP_023891540.1 147 CKKFCY-GeECPYGDRCNFLH 166 555555.559*********** PP
3	zf-CCCH	36.9	5.9e-12	225	249	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ + r G+C+yGd+C+FaHg+ XP_023891540.1 225 KTKLCNSWER-GQCHYGDKCHFAHGQ 249 9*******.***********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence
MSFPDPHPLF MMQSQHFASD AIGVWPQAPT NNDQFDGHSQ PFKRPRNSED NLSDALPCTP 60 MNSRMNPPNP PPINKGTSNI FYKTKMCTSF IAGMCTKGSD CKYAHGIEDM RQPPPNWQEL 120 AGLRGVEDRS SGNWDDDQML IHKLKLCKKF CYGEECPYGD RCNFLHEDPA KFRDDSKRFR 180 ESSVISIGTS GSSMAHGSVS NQSDGNRPVN NGPDAFRVTT RPYLKTKLCN SWERGQCHYG 240 DKCHFAHGQA ELRVAVGLLE GDTLSTGSIP VLAKPQSVPA NDASLIKTGS MPTLTEEGQQ 300 GKKCLLKWKR PQKINRIYGD WLDDMPLVQH LPSKVES

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	1e-83	C3H family protein