PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023891261.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family MYB
Protein Properties Length: 316aa    MW: 35786.1 Da    PI: 9.7428
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023891261.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.31.7e-082774247
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                      +WT+ E +l+ +a + + ++   +W+++a++++ g+t  ++   ++++
   XP_023891261.1 27 SKWTPAENKLFENALAVYDKEspdRWHKVAAMIP-GKTVGDVMKQYRDL 74
                     58******************9*************.*******9999875 PP
2Myb_DNA-binding48.12.7e-15138182347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
   XP_023891261.1 138 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVVTRTPTQVASHAQKY 182
                      8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    
MVNWDVMKWE TEILPPNWGL DHESKSSKWT PAENKLFENA LAVYDKESPD RWHKVAAMIP  60
GKTVGDVMKQ YRDLEVDVNN IEAGLIPIPG YTTSTSPFTL DWNSHGLAYD GFRQPYSIAG  120
KRSSSARPTE QERKKGVPWT EEEHKLFLMG LKKYGKGDWR NISRNFVVTR TPTQVASHAQ  180
KYFIRQLSGG KDKRRASIHD ITTVNLIDMK SPSPDNKRTP SPEHSTVLHH HHNQQQSNSA  240
ATGRIPFQWN QPNGGGGATM AFNQTYGNVF MTSPYNSFGI KLEGQNLHRG VAHESYNIGP  300
QNMVFQMHSA QHYSHG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.11e-103MYB_related family protein