PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G58900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MYB_related | ||||||||
Protein Properties | Length: 288aa MW: 31492.1 Da PI: 6.793 | ||||||||
Description | Homeodomain-like transcriptional regulator | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.9 | 1.3e-14 | 142 | 186 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G+g+W+ I+r + +Rt+ q+ s+ qky AT5G58900.1 142 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 186 8*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 7.371 | 29 | 84 | IPR017884 | SANT domain |
SMART | SM00717 | 1.9E-7 | 30 | 82 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.1E-10 | 33 | 86 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.72E-7 | 33 | 79 | No hit | No description |
PROSITE profile | PS51294 | 20.772 | 135 | 191 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.89E-17 | 137 | 190 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.8E-17 | 138 | 190 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.2E-12 | 139 | 186 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-13 | 139 | 189 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.0E-13 | 142 | 186 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.67E-11 | 142 | 187 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MEVMRPSTSH VSGGNWLMEE TKSGVAASGE GATWTAAENK AFENALAVYD DNTPDRWQKV 60 AAVIPGKTVS DVIRQYNDLE ADVSSIEAGL IPVPGYITSP PFTLDWAGGG GGCNGFKPGH 120 QVCNKRSQAG RSPELERKKG VPWTEEEHKL FLMGLKKYGK GDWRNISRNF VITRTPTQVA 180 SHAQKYFIRQ LSGGKDKRRA SIHDITTVNL EEEASLETNK SSIVVGDQRS RLTAFPWNQT 240 DNNGTQADAF NITIGNAISG VHSYGQVMIG GYNNADSCYD AQNTMFQL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-18 | 26 | 99 | 3 | 76 | RADIALIS |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.7757 | 0.0 | leaf| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 42568642 | 0.0 | ||||
Genevisible | 247768_at | 0.0 | ||||
Expression Atlas | AT5G58900 | - | ||||
AtGenExpress | AT5G58900 | - | ||||
ATTED-II | AT5G58900 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00568 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G58900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G58900 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK118891 | 0.0 | AK118891.1 Arabidopsis thaliana At5g58900 mRNA for putative I-box binding factor, complete cds, clone: RAFL21-22-M07. | |||
GenBank | AY519533 | 0.0 | AY519533.1 Arabidopsis thaliana MYB transcription factor (At5g58900) mRNA, complete cds. | |||
GenBank | BT005473 | 0.0 | BT005473.1 Arabidopsis thaliana clone U51211 putative I-box binding factor (At5g58900) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_200698.1 | 0.0 | Homeodomain-like transcriptional regulator | ||||
Swissprot | Q8S9H7 | 1e-105 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | Q9FIL9 | 0.0 | Q9FIL9_ARATH; Homeodomain-like transcriptional regulator | ||||
STRING | AT5G58900.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1228 | 27 | 100 | Representative plant | OGRP275 | 17 | 122 |
Link Out ? help Back to Top | |
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Phytozome | AT5G58900.1 |
Entrez Gene | 836007 |
iHOP | AT5G58900 |
wikigenes | AT5G58900 |