PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023889144.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 410aa MW: 46339.2 Da PI: 8.9199

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023889144.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	23.6	1.3e-07	221	245	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C dCgk F +k +L+ H+r H XP_023889144.1 221 YTCVipDCGKAFYQKTHLEIHMRAH 245 899999*****************99 PP
2	zf-C2H2	17	1.6e-05	253	275	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ Cg++Fs+ nLk+H r+H XP_023889144.1 253 CKetSCGQRFSQLGNLKTHERRH 275 88889*****************9 PP
3	zf-C2H2	19.8	2.1e-06	281	303	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C +Cgk+F ++ n + H +H XP_023889144.1 281 YQCDICGKTFAQHGNVRAHKIVH 303 9******************9888 PP
4	zf-C2H2	20.9	9.7e-07	309	334	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C+ +C+k F++ nLk+H+++ H XP_023889144.1 309 FTCKldNCDKQFTQLGNLKSHQNKfH 334 89*********************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence
MSYHPDAAAL NNVTHQQINL SHEKSPELTG LTASFITDYR SDTSPSMAEC VSRSMHFQQL 60 SAQTWGNAID HASMMPTQTF KEAILPHGLH MDDCLSPYNL SPGFDPLMFG SMSWGSIQQH 120 SSQSTAFRMQ HYRGTDTEPC IKREKSPTMS SQILYEPGQS LLFADALMST TSDADSKPAV 180 FSTDIDTLMR AIQAKADPPK QNLRERRRAQ PSITNKPRKP YTCVIPDCGK AFYQKTHLEI 240 HMRAHTGVKP FLCKETSCGQ RFSQLGNLKT HERRHTGERP YQCDICGKTF AQHGNVRAHK 300 IVHTATKPFT CKLDNCDKQF TQLGNLKSHQ NKFHVETIRR LKNRFETFQE GDQVEKWETE 360 MWEYFGSLYK NCNKGIKGRG KDRRIGTTSN RSERSPSLGS ASIATSDCST

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence

MSYHPDAAAL NNVTHQQINL SHEKSPELTG LTASFITDYR SDTSPSMAEC VSRSMHFQQL  60
SAQTWGNAID HASMMPTQTF KEAILPHGLH MDDCLSPYNL SPGFDPLMFG SMSWGSIQQH  120
SSQSTAFRMQ HYRGTDTEPC IKREKSPTMS SQILYEPGQS LLFADALMST TSDADSKPAV  180
FSTDIDTLMR AIQAKADPPK QNLRERRRAQ PSITNKPRKP YTCVIPDCGK AFYQKTHLEI  240
HMRAHTGVKP FLCKETSCGQ RFSQLGNLKT HERRHTGERP YQCDICGKTF AQHGNVRAHK  300
IVHTATKPFT CKLDNCDKQF TQLGNLKSHQ NKFHVETIRR LKNRFETFQE GDQVEKWETE  360
MWEYFGSLYK NCNKGIKGRG KDRRIGTTSN RSERSPSLGS ASIATSDCST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.2	3e-14	C2H2 family protein