PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023887547.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family MYB
Protein Properties Length: 312aa    MW: 35494.7 Da    PI: 4.8289
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023887547.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.91.6e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l++ +   G  +W+++++  g+ R++k+c++rw +yl
   XP_023887547.1 14 KGPWTAEEDKKLINFILNNGQCCWRAVPKLAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding50.64.4e-1673111747
                      HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       E++  +d+++qlG++ W++Ia++++ gRt++++k++w+++
   XP_023887547.1  73 CEEKMVIDLHAQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 111
                      599*************.*********.************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    
MGRQPCCDKV GLKKGPWTAE EDKKLINFIL NNGQCCWRAV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGLL SACEEKMVID LHAQLGNRWS KIASHLPGRT DNEIKNHWNT HIKKKLKKMG  120
IDPLTHNPIS TATDEPQTQQ QEEQLQHQKE EMQKQQEASP TDTVSEIDQS KELETETSLQ  180
SSSITEPKEE DKSMTSPFDP MELMNGFCID EVPIIEPHEI LVQCAPSSST STSSSTSSNS  240
SNFFQDLQFP DFEWPCDYNN SSNNSMGLWN DDLSSWDLLI NDDGDRKQTV NPSLSQCPRM  300
VLDQESWAYS QL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.17e-89MYB family protein