PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023887031.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 403aa MW: 45085.2 Da PI: 10.0228

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023887031.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49	1.4e-15	183	229	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT++Ed llv++v ++G + W+ Iar + gR +kqc++rw+++l XP_023887031.1 183 KGQWTPQEDRLLVQLVDRFGIKKWSQIARIIT-GRVGKQCRERWHNHL 229 799**************************9.***********97 PP
2	Myb_DNA-binding	59.1	9.5e-19	235	277	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT+eEd +l++a+kq G++ W+ Iar+++ gRt++ +k++w+ XP_023887031.1 235 KDNWTEEEDRILIEAHKQIGNK-WAEIARRLP-GRTENTIKNHWN 277 689*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence
MAFGGNLPYF PNLLSGSPSK QELPNELGGD GFSIAGSNSS NALAPNNVHH FDHAVPFNGS 60 NLNPHHPISL FANEFCSDFN AYASSVFAPD GKNGNMHGLE NDISPGLRDN PQKDLVHSVV 120 QTEAYLPLNS QQLGSANGSL AESMSCTAAE TNKYLSKVDL KKQQRLHMGK ASKARKKYAN 180 IIKGQWTPQE DRLLVQLVDR FGIKKWSQIA RIITGRVGKQ CRERWHNHLR PDIRKDNWTE 240 EEDRILIEAH KQIGNKWAEI ARRLPGRTEN TIKNHWNATK RRQNSKKNSR DSNSSATLLQ 300 SYIKAVTSPN MHVNDNSIII NNNNNNNLSE SSVHMVNMVT NNPQVQLENS NLTSPNWAAF 360 LNNVYNHNEA ANTVGQGNGV VRDDCRSRKR LGYANSWWAS FAR

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence

MAFGGNLPYF PNLLSGSPSK QELPNELGGD GFSIAGSNSS NALAPNNVHH FDHAVPFNGS  60
NLNPHHPISL FANEFCSDFN AYASSVFAPD GKNGNMHGLE NDISPGLRDN PQKDLVHSVV  120
QTEAYLPLNS QQLGSANGSL AESMSCTAAE TNKYLSKVDL KKQQRLHMGK ASKARKKYAN  180
IIKGQWTPQE DRLLVQLVDR FGIKKWSQIA RIITGRVGKQ CRERWHNHLR PDIRKDNWTE  240
EEDRILIEAH KQIGNKWAEI ARRLPGRTEN TIKNHWNATK RRQNSKKNSR DSNSSATLLQ  300
SYIKAVTSPN MHVNDNSIII NNNNNNNLSE SSVHMVNMVT NNPQVQLENS NLTSPNWAAF  360
LNNVYNHNEA ANTVGQGNGV VRDDCRSRKR LGYANSWWAS FAR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27785.1	6e-62	MYB family protein