PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023886854.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 687aa MW: 76415.7 Da PI: 8.093

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023886854.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.5	0.00044	61	82	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C+ F ++ n++rHir+H XP_023886854.1 61 KCDKCSLEFCSPINYRRHIRVH 82 7********************6 PP

Sequence ? help Back to Top
Protein Sequence Length: 687 aa Download sequence
MKSEGNDSSD TIIRQAIKEP LLSFSRPGES PVQLIQLLHA LDQQELPGWP LLTPLKVQMQ 60 KCDKCSLEFC SPINYRRHIR VHHRLKKLDK DSTKNRDLLG AFWDKLSLEE AKEVVSFKNV 120 TLEGVPGSSI VKSLTTLTRK PGFSTLPQVY LRAGSALLDI IQARPLRFPI SAQELFGILD 180 VASENTFLCG TAGLMQKYIF DGEAGKIGLE TKNLVACTSF LVEQKLVKAW LADQDAEALR 240 CQKLLVEEEE AAQKRKTELL ERKRQKKLRQ KEQKAKEQKH GEKVDVVGFI DNTSEAMPVP 300 QEETCSPSAA CDSDTSVPEM LPDQAPSSSE AFRHTNSDEE AGPDSQSGYG FEYAEPGISQ 360 NFERRMVHGS VRRHVTVARW QVPPKSQRAV PNGFHSGQNS QASKLGVVQK HGIHRDLRAA 420 PVANGNKVWS RKPKLEIDGE ILKARVQKEA INQPDQIKNR EVLIGSICVT LRNCDQETNN 480 LAGAREDCLA EHQMPKTNIQ EKPIKPDSLL SGTNRSMIKL WRPVSRHENK GPMPVQNGNI 540 ESELDVTAEK DNDQNPNEGC LGSYAMDDND GAAKESFCPG TMGFSIYAAK AFLSERWKEA 600 ITADHVKLVL SPDSEPPRCP EMENDSELVA SQSSNLHKRS ILGSAENRLV NAGAFDSSIT 660 RSVKEKYRAK PEKGVKKKYI PKQSNAT

Sequence ? help Back to Top

Protein Sequence Length: 687 aa Download sequence

MKSEGNDSSD TIIRQAIKEP LLSFSRPGES PVQLIQLLHA LDQQELPGWP LLTPLKVQMQ  60
KCDKCSLEFC SPINYRRHIR VHHRLKKLDK DSTKNRDLLG AFWDKLSLEE AKEVVSFKNV  120
TLEGVPGSSI VKSLTTLTRK PGFSTLPQVY LRAGSALLDI IQARPLRFPI SAQELFGILD  180
VASENTFLCG TAGLMQKYIF DGEAGKIGLE TKNLVACTSF LVEQKLVKAW LADQDAEALR  240
CQKLLVEEEE AAQKRKTELL ERKRQKKLRQ KEQKAKEQKH GEKVDVVGFI DNTSEAMPVP  300
QEETCSPSAA CDSDTSVPEM LPDQAPSSSE AFRHTNSDEE AGPDSQSGYG FEYAEPGISQ  360
NFERRMVHGS VRRHVTVARW QVPPKSQRAV PNGFHSGQNS QASKLGVVQK HGIHRDLRAA  420
PVANGNKVWS RKPKLEIDGE ILKARVQKEA INQPDQIKNR EVLIGSICVT LRNCDQETNN  480
LAGAREDCLA EHQMPKTNIQ EKPIKPDSLL SGTNRSMIKL WRPVSRHENK GPMPVQNGNI  540
ESELDVTAEK DNDQNPNEGC LGSYAMDDND GAAKESFCPG TMGFSIYAAK AFLSERWKEA  600
ITADHVKLVL SPDSEPPRCP EMENDSELVA SQSSNLHKRS ILGSAENRLV NAGAFDSSIT  660
RSVKEKYRAK PEKGVKKKYI PKQSNAT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	261	268	ERKRQKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-153	C2H2 family protein