PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023886851.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 701aa MW: 77899.5 Da PI: 8.2086

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023886851.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.5	0.00045	75	96	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C+ F ++ n++rHir+H XP_023886851.1 75 KCDKCSLEFCSPINYRRHIRVH 96 7********************6 PP

Sequence ? help Back to Top
Protein Sequence Length: 701 aa Download sequence
MPVVKPKSSS SLELMKSEGN DSSDTIIRQA IKEPLLSFSR PGESPVQLIQ LLHALDQQEL 60 PGWPLLTPLK VQMQKCDKCS LEFCSPINYR RHIRVHHRLK KLDKDSTKNR DLLGAFWDKL 120 SLEEAKEVVS FKNVTLEGVP GSSIVKSLTT LTRKPGFSTL PQVYLRAGSA LLDIIQARPL 180 RFPISAQELF GILDVASENT FLCGTAGLMQ KYIFDGEAGK IGLETKNLVA CTSFLVEQKL 240 VKAWLADQDA EALRCQKLLV EEEEAAQKRK TELLERKRQK KLRQKEQKAK EQKHGEKVDV 300 VGFIDNTSEA MPVPQEETCS PSAACDSDTS VPEMLPDQAP SSSEAFRHTN SDEEAGPDSQ 360 SGYGFEYAEP GISQNFERRM VHGSVRRHVT VARWQVPPKS QRAVPNGFHS GQNSQASKLG 420 VVQKHGIHRD LRAAPVANGN KVWSRKPKLE IDGEILKARV QKEAINQPDQ IKNREVLIGS 480 ICVTLRNCDQ ETNNLAGARE DCLAEHQMPK TNIQEKPIKP DSLLSGTNRS MIKLWRPVSR 540 HENKGPMPVQ NGNIESELDV TAEKDNDQNP NEGCLGSYAM DDNDGAAKES FCPGTMGFSI 600 YAAKAFLSER WKEAITADHV KLVLSPDSEP PRCPEMENDS ELVASQSSNL HKRSILGSAE 660 NRLVNAGAFD SSITRSVKEK YRAKPEKGVK KKYIPKQSNA T

Sequence ? help Back to Top

Protein Sequence Length: 701 aa Download sequence

MPVVKPKSSS SLELMKSEGN DSSDTIIRQA IKEPLLSFSR PGESPVQLIQ LLHALDQQEL  60
PGWPLLTPLK VQMQKCDKCS LEFCSPINYR RHIRVHHRLK KLDKDSTKNR DLLGAFWDKL  120
SLEEAKEVVS FKNVTLEGVP GSSIVKSLTT LTRKPGFSTL PQVYLRAGSA LLDIIQARPL  180
RFPISAQELF GILDVASENT FLCGTAGLMQ KYIFDGEAGK IGLETKNLVA CTSFLVEQKL  240
VKAWLADQDA EALRCQKLLV EEEEAAQKRK TELLERKRQK KLRQKEQKAK EQKHGEKVDV  300
VGFIDNTSEA MPVPQEETCS PSAACDSDTS VPEMLPDQAP SSSEAFRHTN SDEEAGPDSQ  360
SGYGFEYAEP GISQNFERRM VHGSVRRHVT VARWQVPPKS QRAVPNGFHS GQNSQASKLG  420
VVQKHGIHRD LRAAPVANGN KVWSRKPKLE IDGEILKARV QKEAINQPDQ IKNREVLIGS  480
ICVTLRNCDQ ETNNLAGARE DCLAEHQMPK TNIQEKPIKP DSLLSGTNRS MIKLWRPVSR  540
HENKGPMPVQ NGNIESELDV TAEKDNDQNP NEGCLGSYAM DDNDGAAKES FCPGTMGFSI  600
YAAKAFLSER WKEAITADHV KLVLSPDSEP PRCPEMENDS ELVASQSSNL HKRSILGSAE  660
NRLVNAGAFD SSITRSVKEK YRAKPEKGVK KKYIPKQSNA T

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	275	282	ERKRQKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-151	C2H2 family protein