PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023886292.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 557aa MW: 61957.8 Da PI: 5.862

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023886292.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.1	0.0012	150	171	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C C+k+F + +L H+r+H XP_023886292.1 150 TCYVCKKTFLSMKSLFGHMRSH 171 6********************9 PP
2	zf-C2H2	12.1	0.0006	400	422	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C++sF+++ L H ++H XP_023886292.1 400 YICSLCNRSFPTHQALGGHRSSH 422 89**************9999998 PP

Sequence ? help Back to Top
Protein Sequence Length: 557 aa Download sequence
MDDNQESQIH GDDLEKDDVG TARVLKEREE EEKNDNKVSA EKNGRPCFKL LKLKYPNTES 60 FLQRHPPPPP PPKEELLVSS SPTTRICNIC NRGFGSGKAL GGHMRMHVQA RNKELLEKLN 120 NATTTSTNTT RDIIAKTNES FSTTEEGEPT CYVCKKTFLS MKSLFGHMRS HPERDWRGIQ 180 PPTTPTDHKY YNNCSSSSTL SDEKLDTFPA ITATSEVFLD LSESLTSWRV TGKRGRKSTD 240 SANDSGLLLD IDVDAVFGLM TLANVDPRQA SNLSESTYCN SMMDARKKLR IDEGRSSSRE 300 VLHNKIEAKG KGKPVVEETA LEVPLNMKWN LFGYEEESPR EYYGHNSNDS SELDSADKTV 360 GETMVMSNKR KTRKVKLVEL EALGDDQSHK QVDSVTPNRY ICSLCNRSFP THQALGGHRS 420 SHNKVKYIQQ QTLDESVSAD DSTAENYGHY ANPTTTTQMD EEAVLGPTAH QCKICDRTFP 480 TGQALGGHKR CHWNGTVEMQ SSQVTSPEGE AKAQSSQATS PGEASQTGRR NLEFDLNELP 540 AMEVEEGIVE SIYMAAA

Sequence ? help Back to Top

Protein Sequence Length: 557 aa Download sequence

MDDNQESQIH GDDLEKDDVG TARVLKEREE EEKNDNKVSA EKNGRPCFKL LKLKYPNTES  60
FLQRHPPPPP PPKEELLVSS SPTTRICNIC NRGFGSGKAL GGHMRMHVQA RNKELLEKLN  120
NATTTSTNTT RDIIAKTNES FSTTEEGEPT CYVCKKTFLS MKSLFGHMRS HPERDWRGIQ  180
PPTTPTDHKY YNNCSSSSTL SDEKLDTFPA ITATSEVFLD LSESLTSWRV TGKRGRKSTD  240
SANDSGLLLD IDVDAVFGLM TLANVDPRQA SNLSESTYCN SMMDARKKLR IDEGRSSSRE  300
VLHNKIEAKG KGKPVVEETA LEVPLNMKWN LFGYEEESPR EYYGHNSNDS SELDSADKTV  360
GETMVMSNKR KTRKVKLVEL EALGDDQSHK QVDSVTPNRY ICSLCNRSFP THQALGGHRS  420
SHNKVKYIQQ QTLDESVSAD DSTAENYGHY ANPTTTTQMD EEAVLGPTAH QCKICDRTFP  480
TGQALGGHKR CHWNGTVEMQ SSQVTSPEGE AKAQSSQATS PGEASQTGRR NLEFDLNELP  540
AMEVEEGIVE SIYMAAA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56200.1	2e-22	C2H2 family protein