PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023886081.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family C3H
Protein Properties Length: 209aa    MW: 24206.1 Da    PI: 6.3439
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023886081.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH308.9e-101538326
                    S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                     ++C+f+++ G C++GdrC++ H+
  XP_023886081.1 15 KVNCSFYYKIGACRHGDRCSRKHV 38
                    689********************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    
MANYLASIFG TEQDKVNCSF YYKIGACRHG DRCSRKHVKP SYSQTILLPN LYQNPAYDPK  60
ARMNASQLQN HFDAFYEDFW CEMCQYGEIE EVVVCDNNND HLIGNVYARF KYEESASQAC  120
EALNSRWYAA KPVYCELSPV TDFREACCRL NSGEGCVRGG FCNFIHRKEP SPELDRELEL  180
ATKKWLRERG RDDRSVERSP TPPPQNPRD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.15e-34C3H family protein