PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023885924.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 375aa MW: 43687.8 Da PI: 8.3743

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023885924.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00027	22	44	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++Cg + s ks+ ++H+ tH XP_023885924.1 22 YYCEYCGICRSKKSLVTSHMLTH 44 89********************6 PP
2	zf-C2H2	18.6	5.2e-06	67	88	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cg F+ + +Lk+H+ +H XP_023885924.1 67 TCQECGAKFTKPAYLKQHMLSH 88 6*******************99 PP
3	zf-C2H2	18.8	4.5e-06	94	118	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+Cp dC+ s++rk++L+rH+ H XP_023885924.1 94 YTCPvdDCHSSYRRKDHLTRHLLQH 118 9********************9887 PP
4	zf-C2H2	16.4	2.5e-05	123	148	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 +kCp +Cg Fs + n++rH + H XP_023885924.1 123 FKCPieNCGHEFSYQGNMTRHVKEfH 148 89********************9988 PP
5	zf-C2H2	18.6	5.1e-06	163	187	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ Cgk+F+ s L++H +H XP_023885924.1 163 FVCQeiGCGKVFKFASKLRKHEESH 187 89*******************9988 PP
6	zf-C2H2	15.9	3.6e-05	254	278	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC+ C +Fs+ksnL++Hi+ H XP_023885924.1 254 KCHydGCLHTFSTKSNLHQHIKAvH 278 79*******************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence
MSDLLSEMGE IEKPIFRDIR RYYCEYCGIC RSKKSLVTSH MLTHHKEEME KNRVNGEEEK 60 EGKKSNTCQE CGAKFTKPAY LKQHMLSHSV ERLYTCPVDD CHSSYRRKDH LTRHLLQHQG 120 KLFKCPIENC GHEFSYQGNM TRHVKEFHSK DCPPINAEPQ KQFVCQEIGC GKVFKFASKL 180 RKHEESHVKL DSVEALCCEP GCMKYFSNEE CLKSHIQSCH QHITCEICGT KQLRRNIKRH 240 LQIHEDTVSL ERVKCHYDGC LHTFSTKSNL HQHIKAVHLE LKPFACSFSG CGMRFAHKHV 300 RDKHEKTGCH VHTFGDFEES DNQFQSRIRG GRKRKCPTVE MLIRKRITPP SPPSQSDEES 360 DYLGWLHSQR TGNEL

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence

MSDLLSEMGE IEKPIFRDIR RYYCEYCGIC RSKKSLVTSH MLTHHKEEME KNRVNGEEEK  60
EGKKSNTCQE CGAKFTKPAY LKQHMLSHSV ERLYTCPVDD CHSSYRRKDH LTRHLLQHQG  120
KLFKCPIENC GHEFSYQGNM TRHVKEFHSK DCPPINAEPQ KQFVCQEIGC GKVFKFASKL  180
RKHEESHVKL DSVEALCCEP GCMKYFSNEE CLKSHIQSCH QHITCEICGT KQLRRNIKRH  240
LQIHEDTVSL ERVKCHYDGC LHTFSTKSNL HQHIKAVHLE LKPFACSFSG CGMRFAHKHV  300
RDKHEKTGCH VHTFGDFEES DNQFQSRIRG GRKRKCPTVE MLIRKRITPP SPPSQSDEES  360
DYLGWLHSQR TGNEL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	1e-142	C2H2 family protein