PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023885923.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 378aa MW: 44005.2 Da PI: 8.3122

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023885923.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00027	25	47	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++Cg + s ks+ ++H+ tH XP_023885923.1 25 YYCEYCGICRSKKSLVTSHMLTH 47 89********************6 PP
2	zf-C2H2	18.6	5.2e-06	70	91	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cg F+ + +Lk+H+ +H XP_023885923.1 70 TCQECGAKFTKPAYLKQHMLSH 91 6*******************99 PP
3	zf-C2H2	18.7	4.6e-06	97	121	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+Cp dC+ s++rk++L+rH+ H XP_023885923.1 97 YTCPvdDCHSSYRRKDHLTRHLLQH 121 9********************9887 PP
4	zf-C2H2	16.4	2.5e-05	126	151	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 +kCp +Cg Fs + n++rH + H XP_023885923.1 126 FKCPieNCGHEFSYQGNMTRHVKEfH 151 89********************9988 PP
5	zf-C2H2	18.6	5.1e-06	166	190	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ Cgk+F+ s L++H +H XP_023885923.1 166 FVCQeiGCGKVFKFASKLRKHEESH 190 89*******************9988 PP
6	zf-C2H2	15.9	3.6e-05	257	281	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC+ C +Fs+ksnL++Hi+ H XP_023885923.1 257 KCHydGCLHTFSTKSNLHQHIKAvH 281 79*******************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence
MSDLLSEMGE MGEIEKPIFR DIRRYYCEYC GICRSKKSLV TSHMLTHHKE EMEKNRVNGE 60 EEKEGKKSNT CQECGAKFTK PAYLKQHMLS HSVERLYTCP VDDCHSSYRR KDHLTRHLLQ 120 HQGKLFKCPI ENCGHEFSYQ GNMTRHVKEF HSKDCPPINA EPQKQFVCQE IGCGKVFKFA 180 SKLRKHEESH VKLDSVEALC CEPGCMKYFS NEECLKSHIQ SCHQHITCEI CGTKQLRRNI 240 KRHLQIHEDT VSLERVKCHY DGCLHTFSTK SNLHQHIKAV HLELKPFACS FSGCGMRFAH 300 KHVRDKHEKT GCHVHTFGDF EESDNQFQSR IRGGRKRKCP TVEMLIRKRI TPPSPPSQSD 360 EESDYLGWLH SQRTGNEL

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence

MSDLLSEMGE MGEIEKPIFR DIRRYYCEYC GICRSKKSLV TSHMLTHHKE EMEKNRVNGE  60
EEKEGKKSNT CQECGAKFTK PAYLKQHMLS HSVERLYTCP VDDCHSSYRR KDHLTRHLLQ  120
HQGKLFKCPI ENCGHEFSYQ GNMTRHVKEF HSKDCPPINA EPQKQFVCQE IGCGKVFKFA  180
SKLRKHEESH VKLDSVEALC CEPGCMKYFS NEECLKSHIQ SCHQHITCEI CGTKQLRRNI  240
KRHLQIHEDT VSLERVKCHY DGCLHTFSTK SNLHQHIKAV HLELKPFACS FSGCGMRFAH  300
KHVRDKHEKT GCHVHTFGDF EESDNQFQSR IRGGRKRKCP TVEMLIRKRI TPPSPPSQSD  360
EESDYLGWLH SQRTGNEL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	1e-139	C2H2 family protein