PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023885184.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C3H

Protein Properties

Length: 914aa MW: 100771 Da PI: 7.8759

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023885184.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.7	1.5e-06	175	196	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 t lC++f G C++G+ C+F H XP_023885184.1 175 TQLCKDFTT-GRCRRGNHCQFLH 196 789****.*********** PP
2	zf-CCCH	21	5.7e-07	235	257	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 t+ C +f r G C++G++C++aH+ XP_023885184.1 235 TAYCTDFIR-GKCRRGASCRYAHD 257 788****.***********5 PP
3	zf-CCCH	20.5	8.7e-07	298	320	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+ffa+ G C+ G C+F+H XP_023885184.1 298 EVPCKFFAA-GNCRNGKFCRFSHH 320 6899999.***********6 PP

Sequence ? help Back to Top
Protein Sequence Length: 914 aa Download sequence
MSGSSRKRGS KWDLREEDQF EDENVPVDCW PGKAGMSFHE EDSECRWLST EVAGSNRSKW 60 SDLENDLLEA KHDLEPLPRS SVSLRDGSFS KGRNRNLEAT VAWDGDGSYS MNMSPGLDEW 120 TGQSRSRSPK NGWSRSLRGR SRSRSRSRSR SRSPVRGIRR ESGFHDRSRS RGASTQLCKD 180 FTTGRCRRGN HCQFLHQGNQ HYEDNWESRH RKGGDSKYST PHDARDYTSR MGRSTAYCTD 240 FIRGKCRRGA SCRYAHDGAS DSFSKGSAND VIRERENYRN RDLSFERGGE PEHRRVGEVP 300 CKFFAAGNCR NGKFCRFSHH TRAGVSPDGR SGDGDDRWGL RRHSVDIDRL RDGPKRSEWS 360 DTVTVSDATK SEDNDGQLSA PAQRSTAWSR VDTRWSHNVD EGKRTGGDPK VGYKAAESNE 420 KEGNPWKEEN AVASVSVPES SGAEKWSGDM DMSPDWNYVL PSTNHVVKEE HGHLTQASQS 480 FGSYDTFVVT RGQEITKEAS VPMHDAAAVV QPIINEKSYF QQNHNLRDDG AIALSCDDKS 540 AIEKTVSSSV DLNFSANVLP GQCFDQNGQS SSSLPLPNIN QVVTPTASSR GGTTKYQQNL 600 VFSPKSLTKP EIGGASSSQV NPGISPRQNM VSSEQLTHLT NLSASLAQFF GNGPQLPQIY 660 AALNSHNSVD VPSISKSEGP LQPVSGAQVQ QNPAIGSQQY DPICDSIEPK KSDISNNPSG 720 ISPNQSGHKS SVDVKPEIPL KDMSPSPLPH KPNGSDFHRI GSSEEPNHKS QPSNQQETGA 780 NNEVAMENNG VGAEESKKAQ EGNQNAQEDG PLGNVDGDAE ADDGKKSKDV KGIRAFKFAL 840 VEFVKEILKP AWKEGQIGKD AYKTIVKKVV DKVTSTFQGA NIPQTQEKID YYLSSSKPKL 900 TKLVQAYMEK VQKG

Sequence ? help Back to Top

Protein Sequence Length: 914 aa Download sequence

MSGSSRKRGS KWDLREEDQF EDENVPVDCW PGKAGMSFHE EDSECRWLST EVAGSNRSKW  60
SDLENDLLEA KHDLEPLPRS SVSLRDGSFS KGRNRNLEAT VAWDGDGSYS MNMSPGLDEW  120
TGQSRSRSPK NGWSRSLRGR SRSRSRSRSR SRSPVRGIRR ESGFHDRSRS RGASTQLCKD  180
FTTGRCRRGN HCQFLHQGNQ HYEDNWESRH RKGGDSKYST PHDARDYTSR MGRSTAYCTD  240
FIRGKCRRGA SCRYAHDGAS DSFSKGSAND VIRERENYRN RDLSFERGGE PEHRRVGEVP  300
CKFFAAGNCR NGKFCRFSHH TRAGVSPDGR SGDGDDRWGL RRHSVDIDRL RDGPKRSEWS  360
DTVTVSDATK SEDNDGQLSA PAQRSTAWSR VDTRWSHNVD EGKRTGGDPK VGYKAAESNE  420
KEGNPWKEEN AVASVSVPES SGAEKWSGDM DMSPDWNYVL PSTNHVVKEE HGHLTQASQS  480
FGSYDTFVVT RGQEITKEAS VPMHDAAAVV QPIINEKSYF QQNHNLRDDG AIALSCDDKS  540
AIEKTVSSSV DLNFSANVLP GQCFDQNGQS SSSLPLPNIN QVVTPTASSR GGTTKYQQNL  600
VFSPKSLTKP EIGGASSSQV NPGISPRQNM VSSEQLTHLT NLSASLAQFF GNGPQLPQIY  660
AALNSHNSVD VPSISKSEGP LQPVSGAQVQ QNPAIGSQQY DPICDSIEPK KSDISNNPSG  720
ISPNQSGHKS SVDVKPEIPL KDMSPSPLPH KPNGSDFHRI GSSEEPNHKS QPSNQQETGA  780
NNEVAMENNG VGAEESKKAQ EGNQNAQEDG PLGNVDGDAE ADDGKKSKDV KGIRAFKFAL  840
VEFVKEILKP AWKEGQIGKD AYKTIVKKVV DKVTSTFQGA NIPQTQEKID YYLSSSKPKL  900
TKLVQAYMEK VQKG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	138	146	RGRSRSRSR
2	138	148	RGRSRSRSRSR
3	140	148	RGRSRSRSR
4	140	150	RGRSRSRSRSR
5	142	150	RGRSRSRSR
6	142	152	RGRSRSRSRSR
7	144	152	RGRSRSRSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	3e-12	C3H family protein