PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023885183.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
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Family | C3H | ||||||||
Protein Properties | Length: 914aa MW: 100771 Da PI: 7.8759 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.7 | 1.5e-06 | 175 | 196 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 t lC++f G C++G+ C+F H XP_023885183.1 175 TQLCKDFTT-GRCRRGNHCQFLH 196 789******.************* PP | |||||||
2 | zf-CCCH | 21 | 5.7e-07 | 235 | 257 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 t+ C +f r G C++G++C++aH+ XP_023885183.1 235 TAYCTDFIR-GKCRRGASCRYAHD 257 788******.*************5 PP | |||||||
3 | zf-CCCH | 20.5 | 8.7e-07 | 298 | 320 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+ffa+ G C+ G C+F+H XP_023885183.1 298 EVPCKFFAA-GNCRNGKFCRFSHH 320 689**9999.*************6 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 914 aa Download sequence |
MSGSSRKRGS KWDLREEDQF EDENVPVDCW PGKAGMSFHE EDSECRWLST EVAGSNRSKW 60 SDLENDLLEA KHDLEPLPRS SVSLRDGSFS KGRNRNLEAT VAWDGDGSYS MNMSPGLDEW 120 TGQSRSRSPK NGWSRSLRGR SRSRSRSRSR SRSPVRGIRR ESGFHDRSRS RGASTQLCKD 180 FTTGRCRRGN HCQFLHQGNQ HYEDNWESRH RKGGDSKYST PHDARDYTSR MGRSTAYCTD 240 FIRGKCRRGA SCRYAHDGAS DSFSKGSAND VIRERENYRN RDLSFERGGE PEHRRVGEVP 300 CKFFAAGNCR NGKFCRFSHH TRAGVSPDGR SGDGDDRWGL RRHSVDIDRL RDGPKRSEWS 360 DTVTVSDATK SEDNDGQLSA PAQRSTAWSR VDTRWSHNVD EGKRTGGDPK VGYKAAESNE 420 KEGNPWKEEN AVASVSVPES SGAEKWSGDM DMSPDWNYVL PSTNHVVKEE HGHLTQASQS 480 FGSYDTFVVT RGQEITKEAS VPMHDAAAVV QPIINEKSYF QQNHNLRDDG AIALSCDDKS 540 AIEKTVSSSV DLNFSANVLP GQCFDQNGQS SSSLPLPNIN QVVTPTASSR GGTTKYQQNL 600 VFSPKSLTKP EIGGASSSQV NPGISPRQNM VSSEQLTHLT NLSASLAQFF GNGPQLPQIY 660 AALNSHNSVD VPSISKSEGP LQPVSGAQVQ QNPAIGSQQY DPICDSIEPK KSDISNNPSG 720 ISPNQSGHKS SVDVKPEIPL KDMSPSPLPH KPNGSDFHRI GSSEEPNHKS QPSNQQETGA 780 NNEVAMENNG VGAEESKKAQ EGNQNAQEDG PLGNVDGDAE ADDGKKSKDV KGIRAFKFAL 840 VEFVKEILKP AWKEGQIGKD AYKTIVKKVV DKVTSTFQGA NIPQTQEKID YYLSSSKPKL 900 TKLVQAYMEK VQKG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 138 | 146 | RGRSRSRSR |
2 | 138 | 148 | RGRSRSRSRSR |
3 | 140 | 148 | RGRSRSRSR |
4 | 140 | 150 | RGRSRSRSRSR |
5 | 142 | 150 | RGRSRSRSR |
6 | 142 | 152 | RGRSRSRSRSR |
7 | 144 | 152 | RGRSRSRSR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 3e-12 | C3H family protein |