PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023884307.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 460aa MW: 51835.7 Da PI: 6.1967

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023884307.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.8	3.3e-15	203	249	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT++Ed llv+++ ++G + W+ Iar + gR +kqc++rw+++l XP_023884307.1 203 KGQWTPQEDRLLVQLIDRFGRKIWSQIARIIT-GRVGKQCRERWHNHL 249 799**************************9.***********97 PP
2	Myb_DNA-binding	56.8	5.3e-18	255	297	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT+eEd +l++++kq G++ W+ Iar+++ gRt++ +k++w+ XP_023884307.1 255 KDNWTEEEDRILIEVHKQIGNK-WAEIARRLP-GRTENTIKNHWN 297 689*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence
MAFGGDLPYF PNLLSGSPSK QEIPNELGGD RFSIAGSNSS NALVPNNVHH FDHAVPINGS 60 NLNPHRVDHV NLVGSTSNLL AGIQIPYVDP ISLFANEFYC DFNAYASSVF APDGKNGNMH 120 GLESDVSLGL RDNPQNNSVA QTEAYLLLNT QQLGSSNGSL AENMSCTAAE TNKYLSKVDL 180 KKQQRLHMGK ASKARKKYDN ISKGQWTPQE DRLLVQLIDR FGRKIWSQIA RIITGRVGKQ 240 CRERWHNHLR PDIRKDNWTE EEDRILIEVH KQIGNKWAEI ARRLPGRTEN TIKNHWNATK 300 RRQNSKKNSR DSNSSATLLQ SYIKALTSPN MHVDDNSIIN NNNSLSESSA YMVNMVTNNP 360 QVQLENSDLT SPNWAAFLTN VYNHNEVANI GVSLNNAMPP ENNINFYVPM LEDEEMPCIS 420 DFDDSNWQFE MSMDMTNYLI LDQLGREMEF YEITVGRGSD

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence

MAFGGDLPYF PNLLSGSPSK QEIPNELGGD RFSIAGSNSS NALVPNNVHH FDHAVPINGS  60
NLNPHRVDHV NLVGSTSNLL AGIQIPYVDP ISLFANEFYC DFNAYASSVF APDGKNGNMH  120
GLESDVSLGL RDNPQNNSVA QTEAYLLLNT QQLGSSNGSL AENMSCTAAE TNKYLSKVDL  180
KKQQRLHMGK ASKARKKYDN ISKGQWTPQE DRLLVQLIDR FGRKIWSQIA RIITGRVGKQ  240
CRERWHNHLR PDIRKDNWTE EEDRILIEVH KQIGNKWAEI ARRLPGRTEN TIKNHWNATK  300
RRQNSKKNSR DSNSSATLLQ SYIKALTSPN MHVDDNSIIN NNNSLSESSA YMVNMVTNNP  360
QVQLENSDLT SPNWAAFLTN VYNHNEVANI GVSLNNAMPP ENNINFYVPM LEDEEMPCIS  420
DFDDSNWQFE MSMDMTNYLI LDQLGREMEF YEITVGRGSD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27785.1	2e-57	MYB family protein