PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023884150.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

NF-YC

Protein Properties

Length: 295aa MW: 32084.4 Da PI: 5.9367

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023884150.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	58.1	2e-18	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t+ ++ +v++ ++fdfl ++v r XP_023884150.1 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMSSLHLKHCVQSYTVFDFLKEVVSR 86 5789************************************************************************99986 PP

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YEITLQRGAK 60 TMSSLHLKHC VQSYTVFDFL KEVVSRVPDY SHGHSDAGGE DRAISKRRKA AGDECNDSDE 120 ELKKSKMHEM SHAHASSSGR GRGRGRGRGR GRGRGTIERE AHHIDTGSDP CTSLQQGNKH 180 NQNPDTLMDN GSEAKELSKE NIATTDGANP AARSFDLNAN VDDNEDTKAT AAAATAAAAA 240 AAAPASSAGP TTETRHEEYP GWSLSDVDKM AIDPLQLAHL SKRLDEEDED YDEEG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	140	149	RGRGRGRGRG
2	140	150	RGRGRGRGRGR
3	142	151	RGRGRGRGRG
4	142	152	RGRGRGRGRGR
5	144	153	RGRGRGRGRG
6	144	154	RGRGRGRGRGR
7	146	155	RGRGRGRGRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	2e-77	NF-YC family protein