PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023881677.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 325aa MW: 35935.4 Da PI: 7.2106

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023881677.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.1	9.5e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+eEd +l +++q+G+++W++I++ g+ R++k+c++rw +yl XP_023881677.1 14 RGQWTPEEDNKLSSYIAQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYL 61 89********************************************97 PP
2	Myb_DNA-binding	45.4	1.9e-14	68	110	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++ E++ +v+++ G++ W++Ia+ ++ gRt++++k++w++ XP_023881677.1 68 GQFSDAEEQTIVKLHSVVGNR-WSLIAAQLP-GRTDNDVKNHWNT 110 7899***************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence
MGRIPCCEKD NVKRGQWTPE EDNKLSSYIA QHGTRNWRLI PKNAGLQRCG KSCRLRWTNY 60 LRPDLKHGQF SDAEEQTIVK LHSVVGNRWS LIAAQLPGRT DNDVKNHWNT KLKKKLSGMG 120 IDPVTHKPFS HLMAEIATTL APPQVAHLAE AALGCFKDEM LHLLTKKRID FQIQQPNAAL 180 GNTTATYINS KQDEKDDTIE KIKLGLSRAI QEPEMLPSNK PWDSTGATSA NFAGACSAFP 240 ASMTGYQYGP SSFGNDGDRS PWSQSMCTGS TCTAGDQQVR LHEKLEEENG EDSEGGKGIR 300 NGSSIFSSDC VLWDLSSDDL MNPIV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56110.1	1e-120	MYB family protein