PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023881221.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 973aa MW: 108180 Da PI: 5.0139

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023881221.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.8	1.1e-17	47	92	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g+WT+eEdell +av+ + g++Wk+Ia+++ Rt+ qc +rwqk+l XP_023881221.1 47 GKWTAEEDELLRRAVEHYKGKSWKRIAECFK-DRTDVQCLHRWQKVL 92 89**************************9.**********986 PP
2	Myb_DNA-binding	62.7	7.2e-20	98	144	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde+++++v+++G++ W+tIa+ ++ gR +kqc++rw+++l XP_023881221.1 98 KGPWSKEEDEKIIELVNKYGSKKWSTIAEALP-GRIGKQCRERWHNHL 144 79****************************.***********97 PP
3	Myb_DNA-binding	51.7	2e-16	150	192	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE++ l++a++ +G++ W+ ++ ++ gRt++ +k++w+ XP_023881221.1 150 KEPWTEEEELALIRAHQIYGNK-WAELSKFLP-GRTDNAIKNHWN 192 679*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 973 aa Download sequence
MSRFSTTSCK QVRPPVTTAP GRETDASQKM RPIIGRTSGP TRRSTMGKWT AEEDELLRRA 60 VEHYKGKSWK RIAECFKDRT DVQCLHRWQK VLNPELFKGP WSKEEDEKII ELVNKYGSKK 120 WSTIAEALPG RIGKQCRERW HNHLNPNISK EPWTEEEELA LIRAHQIYGN KWAELSKFLP 180 GRTDNAIKNH WNSSVKKKLQ SYLASGLLEQ FQGLPYVGNP SSSSVGVQQC QVDMVEDDNS 240 DCSQGSIAVI CSQFDSGIEN AARNLRTAEA GCRKGHNMEK YSLLEAETPG HEDYHFSSHN 300 LPNIFVDDSQ ESLGFGTSEH SNCVNEIRDK HSILSRSSVG FNTSATMENM NLLISESDFF 360 QNAFSDTRIP GFFFDGNVTE QSNNLDAGKN SVICQSDSQN SANTRIFAME SCDPLKDVEG 420 GTLDFEAITS SRDDFIYVDS PDIDVDEKDD PMKIDEAKNN PKLVPVNIFS AVVSDSMRKF 480 SSNDENAKQI SKSDEAMVTS KLAPADLFGS VNSDSMQLPP SMDENGATAY KDRRGSGSLC 540 YEPPCFPSLD IPSLNFDPIA SGGDIQQAYS PLGIRQLLMR PMNLSSPCSL WDSPSHKSTP 600 EAILKNASKS FICTPTIMKK RLRDFLSPVE ETKGDKKLGK DKNMKKFSLT SPFSSLESIL 660 DENGALAMSI SSIEEMLDCV VDQKVNTAES MHDKANTGHA FEENKENIAK ESTLNIDPKA 720 KPTGLLVEHN SDDQLVFSPD TDEHQTTRAL SMAILSPKGQ YVIRLDTKSY QGDNIESSSL 780 KNEKYILPAT SSECAPSLET SGNYGNDADI QSFSIFDETP DRKRGIESPS PWKSPWFLST 840 FLPPRADADM TLEDLGYFLS PGMRCYDAIG LMRHLSEDTA ATYANALDVL TNDDPEMPSK 900 TFCSGNKNLS DPDNCFLHNN QENMPPGFLT EQRVLDFSGC GTPGKGTDNK KFPENTSAKS 960 FSSPKSHLMR NCR

Sequence ? help Back to Top

Protein Sequence Length: 973 aa Download sequence

MSRFSTTSCK QVRPPVTTAP GRETDASQKM RPIIGRTSGP TRRSTMGKWT AEEDELLRRA  60
VEHYKGKSWK RIAECFKDRT DVQCLHRWQK VLNPELFKGP WSKEEDEKII ELVNKYGSKK  120
WSTIAEALPG RIGKQCRERW HNHLNPNISK EPWTEEEELA LIRAHQIYGN KWAELSKFLP  180
GRTDNAIKNH WNSSVKKKLQ SYLASGLLEQ FQGLPYVGNP SSSSVGVQQC QVDMVEDDNS  240
DCSQGSIAVI CSQFDSGIEN AARNLRTAEA GCRKGHNMEK YSLLEAETPG HEDYHFSSHN  300
LPNIFVDDSQ ESLGFGTSEH SNCVNEIRDK HSILSRSSVG FNTSATMENM NLLISESDFF  360
QNAFSDTRIP GFFFDGNVTE QSNNLDAGKN SVICQSDSQN SANTRIFAME SCDPLKDVEG  420
GTLDFEAITS SRDDFIYVDS PDIDVDEKDD PMKIDEAKNN PKLVPVNIFS AVVSDSMRKF  480
SSNDENAKQI SKSDEAMVTS KLAPADLFGS VNSDSMQLPP SMDENGATAY KDRRGSGSLC  540
YEPPCFPSLD IPSLNFDPIA SGGDIQQAYS PLGIRQLLMR PMNLSSPCSL WDSPSHKSTP  600
EAILKNASKS FICTPTIMKK RLRDFLSPVE ETKGDKKLGK DKNMKKFSLT SPFSSLESIL  660
DENGALAMSI SSIEEMLDCV VDQKVNTAES MHDKANTGHA FEENKENIAK ESTLNIDPKA  720
KPTGLLVEHN SDDQLVFSPD TDEHQTTRAL SMAILSPKGQ YVIRLDTKSY QGDNIESSSL  780
KNEKYILPAT SSECAPSLET SGNYGNDADI QSFSIFDETP DRKRGIESPS PWKSPWFLST  840
FLPPRADADM TLEDLGYFLS PGMRCYDAIG LMRHLSEDTA ATYANALDVL TNDDPEMPSK  900
TFCSGNKNLS DPDNCFLHNN QENMPPGFLT EQRVLDFSGC GTPGKGTDNK KFPENTSAKS  960
FSSPKSHLMR NCR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11510.2	1e-100	MYB family protein