PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023880419.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 316aa MW: 35674.6 Da PI: 8.8849

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023880419.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.8	1.9e-05	156	175	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C++C+k+F+r n++ H+ XP_023880419.1 156 FACSICSKTFNRYNNMQMHM 175 78*****************9 PP
2	zf-C2H2	16.2	3e-05	240	262	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk+F k + ++H +++ XP_023880419.1 240 FMCRKCGKTFAVKGDWRTHEKNC 262 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence
MSLRNHLVGE HSLCFQAPTF IEWLKPSPSA SSLSSSSSSS SSSSSYSSLT TPKEFVQETL 60 KCLPLLGGFT ETKPLKQQDI RLQKEGYTIK EEEVEKVTVA LHIGLPDTGD SDAEKMIFDS 120 KEQEPVKKSF HGCSFNTQSR FWIPTPAQIL VGPMQFACSI CSKTFNRYNN MQMHMWGHGS 180 EYRKGPDSLK GTQPAAMLRL PCYCCAQGCK NNINHPRAKP LKDFRTLQTH YKRKHGAKPF 240 MCRKCGKTFA VKGDWRTHEK NCGKLWYCTC GSDFKHKRSL KDHIRSFGKG HSPHPSLDGF 300 EDEKECITGS EDEFAR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08290.1	1e-121	C2H2 family protein