PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023880105.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 432aa MW: 48351.7 Da PI: 6.5751

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023880105.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.6	1.1e-05	61	83	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H+r H XP_023880105.1 61 FFCEICNKGFQREQNLQLHQRGH 83 67*******************98 PP
2	zf-C2H2	13.5	0.00021	136	158	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +sn k H + + XP_023880105.1 136 WKCNKCSKKYAVWSNWKAHSKIC 158 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence
MLVDLDNSST ALGEASVSSF GNQSQPLNPT TKKNQCLLGM PDPDVEVVAL SPNTLLATNR 60 FFCEICNKGF QREQNLQLHQ RGHNLPWKQS KRSSKDVKKV YVCPEPSCVH HNPSRALHNL 120 MGIKKHFCGK HSEKKWKCNK CSKKYAVWSN WKAHSKICGT REYKCDCGTL FSRRDSFITH 180 REFCDALVEV SARTQTQPVV NPNSKSETKI QAVDDQGRSY SPSWLFKNLL TTPLNPNPGS 240 VSTVDSSPPT PAPAQAQAQA RPTSPPSTGV ISLVLPIKSP EETSENEIAS EHHGMEIDIG 300 EFKMTDSSEQ KKFEVEEIGN EASQTRQPDV MQVEDMQVQA LSTLKPQRVL FDVNAVNILK 360 SSGLMQSQIE DVEMKYEASE QRGFFLMQCG LGLTMPPKDE DWKNAREIYL MDNELSILPE 420 NPCPSNPELI QD

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence

MLVDLDNSST ALGEASVSSF GNQSQPLNPT TKKNQCLLGM PDPDVEVVAL SPNTLLATNR  60
FFCEICNKGF QREQNLQLHQ RGHNLPWKQS KRSSKDVKKV YVCPEPSCVH HNPSRALHNL  120
MGIKKHFCGK HSEKKWKCNK CSKKYAVWSN WKAHSKICGT REYKCDCGTL FSRRDSFITH  180
REFCDALVEV SARTQTQPVV NPNSKSETKI QAVDDQGRSY SPSWLFKNLL TTPLNPNPGS  240
VSTVDSSPPT PAPAQAQAQA RPTSPPSTGV ISLVLPIKSP EETSENEIAS EHHGMEIDIG  300
EFKMTDSSEQ KKFEVEEIGN EASQTRQPDV MQVEDMQVQA LSTLKPQRVL FDVNAVNILK  360
SSGLMQSQIE DVEMKYEASE QRGFFLMQCG LGLTMPPKDE DWKNAREIYL MDNELSILPE  420
NPCPSNPELI QD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	6e-95	C2H2 family protein