PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023879923.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family C3H
Protein Properties Length: 283aa    MW: 30719.2 Da    PI: 8.2306
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023879923.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.63.2e-11138163227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     kt +Cr + ++GtC+yG +C+FaHg+
  XP_023879923.1 138 KTDICRSWEEFGTCRYGFKCQFAHGK 163
                     9***********************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    
MARLKSTSNL NVSVSQMDKE NNSNHHHHLL FGGELLSPSR PPLPPLLRYL RNRSGSPPLP  60
LSPLDNIAWS PNNNNSPTHY PGSPIKVDED GILVMDGISL PSTGTAGRFS RSSTSATDSS  120
PSSSSSSSSS SGGRSLNKTD ICRSWEEFGT CRYGFKCQFA HGKEELRPPR FSARNKSDSS  180
INRSKSRFLN QIMAAGGGMT IQTESPTKLP VDDTSCKIPT TTISIITSRD DWSPQDDGIE  240
VVLPHSSTAE PPSQKDVDAY IHGVLYGPST RKRLTVFAEI CSE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.12e-09C3H family protein