PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023879142.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 279aa MW: 31415.1 Da PI: 4.6533

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023879142.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.8	1e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++l+ +++++G g+W++ ++ g+ R++k+c++rw +yl XP_023879142.1 14 KGPWTPQEDQILISYIQKYGHGNWRALPKQAGLLRCGKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	50.8	3.9e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ eE+e +++++++lG++ W++Ia++++ gRt++++k+ w+++l XP_023879142.1 67 RGNFSIEEEETIIKLHEMLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 112 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence
MGRAPCCEKM GLKKGPWTPQ EDQILISYIQ KYGHGNWRAL PKQAGLLRCG KSCRLRWTNY 60 LRPDIKRGNF SIEEEETIIK LHEMLGNRWS AIAARLPGRT DNEIKNVWHT HLKKRLKQNQ 120 ANPETKLQLT NCDSNAPMQS ESSSLNVPTQ QGFQSPAYTT MSPQTSSSDD ISSATDVSMA 180 TMDQNNMTNN VKGEHIDIWE TFPEIDEGFW SEAPLAENTS MPSSLLANND ELLQAQFPFN 240 STELVEPDYS DGSNIIDDGM DFWYNLFIGA GGSPELSEF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	118	LKKRLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23250.1	3e-80	MYB family protein