PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023878972.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 563aa MW: 62851.3 Da PI: 7.6617

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023878972.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22.3	3.5e-07	54	78	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ dCgk F r+ L+ H rtH XP_023878972.1 54 YVCEleDCGKAFDRPVKLEAHHRTH 78 99**********************9 PP
2	zf-C2H2	21.8	5e-07	84	109	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y+C+ dC+k+F rk++L+rH + H XP_023878972.1 84 YVCEedDCDKTFQRKEHLTRHVKDkH 109 99*******************98766 PP
3	zf-C2H2	20.1	1.7e-06	155	179	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC+ Cgk F+r+++L+rHi H XP_023878972.1 155 KCSepGCGKIFRRQETLQRHILQdH 179 688889***************8766 PP
4	zf-C2H2	14.1	0.00014	275	297	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +CpdCgk + ++ Lk H+ H XP_023878972.1 275 SCPDCGKLCESNRALKAHQDIeH 297 6******************8877 PP
5	zf-C2H2	16	3.3e-05	306	331	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C+ C++ F+ nLk+Hi++ H XP_023878972.1 306 HRCSwpGCDRGFTKAGNLKVHIQNvH 331 789999****************9988 PP

Sequence ? help Back to Top
Protein Sequence Length: 563 aa Download sequence
MARTLKRSAP HGVEDTPTSK RIRYPDENQY AASVDGSVAE STFTSTSVKR PKIYVCELED 60 CGKAFDRPVK LEAHHRTHTN ERPYVCEEDD CDKTFQRKEH LTRHVKDKHS NERPHTCSYL 120 ITNESGDSVQ CAKSFHTAAK LKRHVAAHEE KEQTKCSEPG CGKIFRRQET LQRHILQDHL 180 GEKAFRCTHF CQETEEQCAQ AFETIGHLKG HIKRVHTAPV TRHYCDICNS QRSWSSAQSS 240 SPDYDGSTTP ARTGRSGFAS YADLQVHIKL VHPPSCPDCG KLCESNRALK AHQDIEHSSL 300 LDRQQHRCSW PGCDRGFTKA GNLKVHIQNV HAKRKTFLCG TFDLSQSKKV VGWSGAGCGI 360 GFGTKANLEE HVRTQHLGIP TKLAPSRLKN LREQAASPSQ SLSSMDTDEI TTPKDHDESM 420 AMLTGFGYEK ARPVACLDAR CLQRFRNNYE LSQHVELTHE WQVEDIEDAL AEREALDGGQ 480 FWIGGREHIG PVAIETDSDK QLRMSLQNAL LADNAAGAGH AITSDRRSQP RDVMSVATGV 540 SRALNSRLST NEAIVIDPAL SCL

Sequence ? help Back to Top

Protein Sequence Length: 563 aa Download sequence

MARTLKRSAP HGVEDTPTSK RIRYPDENQY AASVDGSVAE STFTSTSVKR PKIYVCELED  60
CGKAFDRPVK LEAHHRTHTN ERPYVCEEDD CDKTFQRKEH LTRHVKDKHS NERPHTCSYL  120
ITNESGDSVQ CAKSFHTAAK LKRHVAAHEE KEQTKCSEPG CGKIFRRQET LQRHILQDHL  180
GEKAFRCTHF CQETEEQCAQ AFETIGHLKG HIKRVHTAPV TRHYCDICNS QRSWSSAQSS  240
SPDYDGSTTP ARTGRSGFAS YADLQVHIKL VHPPSCPDCG KLCESNRALK AHQDIEHSSL  300
LDRQQHRCSW PGCDRGFTKA GNLKVHIQNV HAKRKTFLCG TFDLSQSKKV VGWSGAGCGI  360
GFGTKANLEE HVRTQHLGIP TKLAPSRLKN LREQAASPSQ SLSSMDTDEI TTPKDHDESM  420
AMLTGFGYEK ARPVACLDAR CLQRFRNNYE LSQHVELTHE WQVEDIEDAL AEREALDGGQ  480
FWIGGREHIG PVAIETDSDK QLRMSLQNAL LADNAAGAGH AITSDRRSQP RDVMSVATGV  540
SRALNSRLST NEAIVIDPAL SCL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.2	4e-14	C2H2 family protein