PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023878049.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 347aa MW: 39120.2 Da PI: 7.6872

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023878049.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53	7.6e-17	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ +++++G+g +W + ++++g++R++k+c++rw++yl XP_023878049.1 14 KGPWSPEEDAKLKSYIEKHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	37.5	5.3e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ XP_023878049.1 69 GGFSEEEDNIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence
MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE KHGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK 120 QRKEQQARRG TSSLKQEMKR GVEMVSDNNN NQNPYWPELP VLAHIPFSNQ EPRFNDHASI 180 RKFLIKLGGR FSDIDVPIHD GTSSLQFTNG ISSTTQQIYE HSMVNNIPSS APIDAVLNNT 240 GNIQFAQAQS YMDGVELNML QGQSCFPVEL EEIVYNNPQG LDGLEFLCGE DMVYNRIGST 300 STSSESVGWG EMSSVIHPPV ASNYEGMLQR THRECVFEEL RCQTCFP

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence

MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE KHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK  120
QRKEQQARRG TSSLKQEMKR GVEMVSDNNN NQNPYWPELP VLAHIPFSNQ EPRFNDHASI  180
RKFLIKLGGR FSDIDVPIHD GTSSLQFTNG ISSTTQQIYE HSMVNNIPSS APIDAVLNNT  240
GNIQFAQAQS YMDGVELNML QGQSCFPVEL EEIVYNNPQG LDGLEFLCGE DMVYNRIGST  300
STSSESVGWG EMSSVIHPPV ASNYEGMLQR THRECVFEEL RCQTCFP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49690.1	7e-78	MYB family protein