PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023876353.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

ARF

Protein Properties

Length: 1109aa MW: 122812 Da PI: 6.6723

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023876353.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	70.4	2.3e-22	135	236	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++ XP_023876353.1 135 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELIARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDEK 226 99***************************9445444.38********************************************..5688 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 ++l+++++r+ XP_023876353.1 227 QQLLLGIRRA 236 889**997 PP
2	Auxin_resp	120.5	1.3e-39	261	344	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnPras+seFv++++k+ ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+ XP_023876353.1 261 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVYsNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 344 79******************************9989******************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1109 aa Download sequence
MKTPANGAGA ASATSASNSC EGGEKKSINP ELWQACAGPL VNLPPAGTHV VYFPQGHSEQ 60 VAASMKKDVD AQIPNYPNLP SKLLCLLHNV TLHADPETDE VYAQMTLLPV PSFDKDSLLR 120 SDLALKTNKP QPDFFCKTLT ASDTSTHGGF SVPRRAAEKI FPPLDFSMQP PAQELIARDL 180 HDNVWTFRHI YRGQPKRHLL TTGWSLFVSG KRLFAGDSVL FIRDEKQQLL LGIRRANRQP 240 ANLSSSVLSS DSMHIGILAA AAHAAANNSP FTVFYNPRAS PSEFVIPLAK YYKAVYSNQI 300 SLGMRFRMMF ETEESGTRRY MGTITGISDL DPVRWKNSQW RNLQVGWDES TAGERRNRVS 360 IWEIEPVTAP FFICPPPYFR SKRPRQPGMP DDESLDLDNL FRRTMPWIGD DICMRDPQSL 420 PGLSLVQWMN MQQNPSLANT IQPNYTHSMS GSVLQNLSGT DLSRQLGLSA PQIPQTNNMQ 480 FNCQRLPQQA QQPDHLPRLP STLNPLGSVI QSQQQLGDIT QQSRQNVVNQ TQPSSQVQAQ 540 MLQPQSLVQT NNILQQQPSI QNHQPHRSVN QNLQQQHQQQ SMGQNQQQNL IQPQLPDQVN 600 QQLQMSENQI QIQLFQKLQQ QQSLLAQQSP LQQPAQFTQL QDPQRQLLDM SQNFSRPLTP 660 TQMLEVPQAT STSLPQSIPH QMTRNNSHTN IRFSHPPQQP KLQHQQSGVL PEISGQMGLP 720 LPPTTNQLST ACSSIVTGTA GAGQSAITDD LPSCSTSPST NNCPNVVQPV MNGMPHRSTA 780 MGEDMAHSAA TILCPSALET ISSNANLVKD LQQKSDVKPS LNISKNQNQG FFAPQTYLNG 840 AAAQTDYLDT SSSTTSVCLS QNDVHLQQNN NPVSFNPQSL LFRDTSQDGE VQADPRNSVP 900 YGNNIESQLG IPMNPDPLLA KGMTGLGKDI HNNFSSGGII TNYENSKDAQ QELSSSMVSQ 960 SFGVPDMTFN SIDSTINDSS FMNRGPWPPP PQFQRMRTYT KVYKRGAVGR SIDISRYSGY 1020 DELKHGLARM FGIEGQLEDR QRVGWKLVYV DHENDVLLVG DDPWEEFVNC VRCIKILSPQ 1080 EVQQMSLDGD FGSGVLPNQA CSSSDGGNA

Sequence ? help Back to Top

Protein Sequence Length: 1109 aa Download sequence

MKTPANGAGA ASATSASNSC EGGEKKSINP ELWQACAGPL VNLPPAGTHV VYFPQGHSEQ  60
VAASMKKDVD AQIPNYPNLP SKLLCLLHNV TLHADPETDE VYAQMTLLPV PSFDKDSLLR  120
SDLALKTNKP QPDFFCKTLT ASDTSTHGGF SVPRRAAEKI FPPLDFSMQP PAQELIARDL  180
HDNVWTFRHI YRGQPKRHLL TTGWSLFVSG KRLFAGDSVL FIRDEKQQLL LGIRRANRQP  240
ANLSSSVLSS DSMHIGILAA AAHAAANNSP FTVFYNPRAS PSEFVIPLAK YYKAVYSNQI  300
SLGMRFRMMF ETEESGTRRY MGTITGISDL DPVRWKNSQW RNLQVGWDES TAGERRNRVS  360
IWEIEPVTAP FFICPPPYFR SKRPRQPGMP DDESLDLDNL FRRTMPWIGD DICMRDPQSL  420
PGLSLVQWMN MQQNPSLANT IQPNYTHSMS GSVLQNLSGT DLSRQLGLSA PQIPQTNNMQ  480
FNCQRLPQQA QQPDHLPRLP STLNPLGSVI QSQQQLGDIT QQSRQNVVNQ TQPSSQVQAQ  540
MLQPQSLVQT NNILQQQPSI QNHQPHRSVN QNLQQQHQQQ SMGQNQQQNL IQPQLPDQVN  600
QQLQMSENQI QIQLFQKLQQ QQSLLAQQSP LQQPAQFTQL QDPQRQLLDM SQNFSRPLTP  660
TQMLEVPQAT STSLPQSIPH QMTRNNSHTN IRFSHPPQQP KLQHQQSGVL PEISGQMGLP  720
LPPTTNQLST ACSSIVTGTA GAGQSAITDD LPSCSTSPST NNCPNVVQPV MNGMPHRSTA  780
MGEDMAHSAA TILCPSALET ISSNANLVKD LQQKSDVKPS LNISKNQNQG FFAPQTYLNG  840
AAAQTDYLDT SSSTTSVCLS QNDVHLQQNN NPVSFNPQSL LFRDTSQDGE VQADPRNSVP  900
YGNNIESQLG IPMNPDPLLA KGMTGLGKDI HNNFSSGGII TNYENSKDAQ QELSSSMVSQ  960
SFGVPDMTFN SIDSTINDSS FMNRGPWPPP PQFQRMRTYT KVYKRGAVGR SIDISRYSGY  1020
DELKHGLARM FGIEGQLEDR QRVGWKLVYV DHENDVLLVG DDPWEEFVNC VRCIKILSPQ  1080
EVQQMSLDGD FGSGVLPNQA CSSSDGGNA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein