PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023875993.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 403aa MW: 44760.3 Da PI: 8.6352

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023875993.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22.3	3.4e-07	229	251	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cgk F+r nL+ H+r H XP_023875993.1 229 HYCQVCGKGFKRDANLRMHMRAH 251 68*******************99 PP
2	zf-C2H2	10.7	0.0016	324	347	1	23
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C+ C+ k Fs s+L++H + + XP_023875993.1 324 YVCKRCNqKQFSVLSDLRTHEKHC 347 9*******************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence
MLSGANATSC FQNVPLQIYS VNEDVVSASS LEGNSASEPH PNSFLYNFSV LKDKVHQVQS 60 LVSILINTDH SQPEPATSFA VASMSTVIQE IISSATSMMF ICQQMGLGPT AAGSTSTDEL 120 HHGHHGQRHQ TRFSQPNFGG NRAGNIGQGF FSSETLADCW YGGETFNNYG TNKDETRSGA 180 VGNNVNRVER RDQVAQGGDT SEAILERITS KDYDIIELDA ADLLAKYTHY CQVCGKGFKR 240 DANLRMHMRA HGDEYKTSAA LSNPMKNNNG GASGNRDGLL KLPRKYSCPQ EGCRWNRKHA 300 KFQPLKSMIC VKNHYKRSHC PKMYVCKRCN QKQFSVLSDL RTHEKHCGDQ KWQCSCGTTF 360 SRKDKLMGHV ALFIGHTPAT ISLSKLAKVE QQTLQMQIDD RHR

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence

MLSGANATSC FQNVPLQIYS VNEDVVSASS LEGNSASEPH PNSFLYNFSV LKDKVHQVQS  60
LVSILINTDH SQPEPATSFA VASMSTVIQE IISSATSMMF ICQQMGLGPT AAGSTSTDEL  120
HHGHHGQRHQ TRFSQPNFGG NRAGNIGQGF FSSETLADCW YGGETFNNYG TNKDETRSGA  180
VGNNVNRVER RDQVAQGGDT SEAILERITS KDYDIIELDA ADLLAKYTHY CQVCGKGFKR  240
DANLRMHMRA HGDEYKTSAA LSNPMKNNNG GASGNRDGLL KLPRKYSCPQ EGCRWNRKHA  300
KFQPLKSMIC VKNHYKRSHC PKMYVCKRCN QKQFSVLSDL RTHEKHCGDQ KWQCSCGTTF  360
SRKDKLMGHV ALFIGHTPAT ISLSKLAKVE QQTLQMQIDD RHR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22890.1	1e-112	C2H2 family protein