PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023875363.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 485aa MW: 52932.6 Da PI: 9.029

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023875363.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.8	4.4e-06	29	51	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykCp C+k F r ++ +rHirtH XP_023875363.1 29 YKCPLCDKAFHRLEHQTRHIRTH 51 9*********************9 PP
2	zf-C2H2	18.6	5.1e-06	58	81	2	23
EET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirtH 23 C+ C+k+Fsr+++L+rH r H XP_023875363.1 58 ACQfpGCTKRFSRSDELTRHSRIH 81 68888****************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence
MATSTIAMPS PGVALPGNDE SRPDLPRPYK CPLCDKAFHR LEHQTRHIRT HTGEKPHACQ 60 FPGCTKRFSR SDELTRHSRI HNNPNSRRGN KQHVAAAAAA AAAAAGLQSN MYDNQASMQQ 120 MSQMNQLNQL NQLNHVNQMQ SMNQLNQMTQ IGAGPVQPVQ LAPNPMIQHH MGQMNAQMSQ 180 ANNRSSPMPL PQMMPPPPKT SHSTPTSQLN SPDVSPPHSY SATYSNTPGS YMTRNNSGDL 240 SPAQGGYHRP MDINLLATAA SQVERENNNP SHIPNHHLSL PSRQPYTPSP YHHPYGSGRM 300 PSLSSYHYSS HPTSQPMSRS HSHEDDDPYQ HRASKKSRPG SPQSTAPPSP EFSHESTSPT 360 PDHTPLATPS HSPRLRPQFF HNGVQLPTLH HLSLHSQPPP ALAPVEPSTD GHQPYVPTHH 420 SGLRISEIME AGDGAQRKLP VPIVAGSKDG VYTKISELIN PGSGGSSGQN SAQQSEAGND 480 LHERM

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence

MATSTIAMPS PGVALPGNDE SRPDLPRPYK CPLCDKAFHR LEHQTRHIRT HTGEKPHACQ  60
FPGCTKRFSR SDELTRHSRI HNNPNSRRGN KQHVAAAAAA AAAAAGLQSN MYDNQASMQQ  120
MSQMNQLNQL NQLNHVNQMQ SMNQLNQMTQ IGAGPVQPVQ LAPNPMIQHH MGQMNAQMSQ  180
ANNRSSPMPL PQMMPPPPKT SHSTPTSQLN SPDVSPPHSY SATYSNTPGS YMTRNNSGDL  240
SPAQGGYHRP MDINLLATAA SQVERENNNP SHIPNHHLSL PSRQPYTPSP YHHPYGSGRM  300
PSLSSYHYSS HPTSQPMSRS HSHEDDDPYQ HRASKKSRPG SPQSTAPPSP EFSHESTSPT  360
PDHTPLATPS HSPRLRPQFF HNGVQLPTLH HLSLHSQPPP ALAPVEPSTD GHQPYVPTHH  420
SGLRISEIME AGDGAQRKLP VPIVAGSKDG VYTKISELIN PGSGGSSGQN SAQQSEAGND  480
LHERM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	1e-07	C2H2 family protein