PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023874690.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

bHLH

Protein Properties

Length: 480aa MW: 51070.3 Da PI: 6.5989

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023874690.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.8	6.8e-12	269	314	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq XP_023874690.1 269 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 314 99*********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence
MQPCSREMQG MNSLLNPTQI SLQDLQNHHH HQQQQHQQQS QQIQNSQIQH LQNSHFDPNN 60 THDDFLEQMF STIPSCSWPD LNPKTPWDLK PRDLSDETPP SNPDNNVPYQ FDHDSSTLAS 120 KLRNHQISGA TKSSAAAAAA AIMLQQQLFM SRAAGAGAGD SGLIQMPLPL GASDDVVDGS 180 SPFKSPNTGG EGSVQALYNG FTGSLHGPGQ TPNQAQHFHH PQGGQVQGQN YGAPSGVMNQ 240 GPASGSAGSA PAQPRQRVRA RRGQATDPHS IAERLRRERI AERMKALQEL VPNANKTDKA 300 SMLDEIIDYV KFLQLQVKVL SMSRLGGAAA VAPLVADMSS EGGGDCIQAG TNSGALGRNS 360 NGNQTASSND SLTVTEHQVA KLMEEDMGSA MQYLQGKGLC LMPISLATAI STATCHSRNA 420 MINNHNNNNN SNNVNNNPLL QSNGEGPTSP SMSVLTVQSA TMGNGGGDAS VKDNTSVSKP

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence

MQPCSREMQG MNSLLNPTQI SLQDLQNHHH HQQQQHQQQS QQIQNSQIQH LQNSHFDPNN  60
THDDFLEQMF STIPSCSWPD LNPKTPWDLK PRDLSDETPP SNPDNNVPYQ FDHDSSTLAS  120
KLRNHQISGA TKSSAAAAAA AIMLQQQLFM SRAAGAGAGD SGLIQMPLPL GASDDVVDGS  180
SPFKSPNTGG EGSVQALYNG FTGSLHGPGQ TPNQAQHFHH PQGGQVQGQN YGAPSGVMNQ  240
GPASGSAGSA PAQPRQRVRA RRGQATDPHS IAERLRRERI AERMKALQEL VPNANKTDKA  300
SMLDEIIDYV KFLQLQVKVL SMSRLGGAAA VAPLVADMSS EGGGDCIQAG TNSGALGRNS  360
NGNQTASSND SLTVTEHQVA KLMEEDMGSA MQYLQGKGLC LMPISLATAI STATCHSRNA  420
MINNHNNNNN SNNVNNNPLL QSNGEGPTSP SMSVLTVQSA TMGNGGGDAS VKDNTSVSKP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	274	279	RLRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	6e-60	bHLH family protein