PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023872232.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB_related

Protein Properties

Length: 497aa MW: 54783 Da PI: 6.209

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023872232.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.4	2.1e-15	60	104	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rW++eE+++++da k++G W++I +++g ++ + q++s+ qk+ XP_023872232.1 60 RERWSEEEHKKFLDALKLYGRA-WRRIEEHVG-TKNAVQIRSHAQKF 104 78****************88.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence
MAIQDQSVGS RSHSVVQASN GISLSSGLHS VTGVQLGDQF SCGNDYAPKV RKPYTITKQR 60 ERWSEEEHKK FLDALKLYGR AWRRIEEHVG TKNAVQIRSH AQKFFSKIAR DSNGSNTTST 120 EPIEIPPPRP KRKPMHPYPR KLLIPSNKEV SALEQPIRSA SPNSLVWEQE DQSPTSVLSA 180 VGSDTVGFTD SDTPNGSLSP ASSTAGVQPG GLVLSEPNQS TEESASPSPA LTTVGSVSDE 240 QLPMKFELFP RENNYVKEGA SEETSNRSLK LFGRTVLVTD SHRPSSPTIV AGKSMPADIL 300 EEKVVQPLPW NFVPVKSIQG DTEYSWSHST QGVQDGLYFM QCQKENSYLA EANSAAPIPW 360 WTFYGGLRFP VMPFHEVEQS KAHLGSDLEE VQGKEVQKEG SWTGSNNGSV CDGNNGDKCS 420 DAETRSYPLF LKEENQEAGL VFQLRPSENS AFSELGRSPG KCLKGFVPYK RCVAERDTQS 480 STIRGEEREE KQIRLCL

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence

MAIQDQSVGS RSHSVVQASN GISLSSGLHS VTGVQLGDQF SCGNDYAPKV RKPYTITKQR  60
ERWSEEEHKK FLDALKLYGR AWRRIEEHVG TKNAVQIRSH AQKFFSKIAR DSNGSNTTST  120
EPIEIPPPRP KRKPMHPYPR KLLIPSNKEV SALEQPIRSA SPNSLVWEQE DQSPTSVLSA  180
VGSDTVGFTD SDTPNGSLSP ASSTAGVQPG GLVLSEPNQS TEESASPSPA LTTVGSVSDE  240
QLPMKFELFP RENNYVKEGA SEETSNRSLK LFGRTVLVTD SHRPSSPTIV AGKSMPADIL  300
EEKVVQPLPW NFVPVKSIQG DTEYSWSHST QGVQDGLYFM QCQKENSYLA EANSAAPIPW  360
WTFYGGLRFP VMPFHEVEQS KAHLGSDLEE VQGKEVQKEG SWTGSNNGSV CDGNNGDKCS  420
DAETRSYPLF LKEENQEAGL VFQLRPSENS AFSELGRSPG KCLKGFVPYK RCVAERDTQS  480
STIRGEEREE KQIRLCL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	2e-67	MYB_related family protein