PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023871731.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 351aa MW: 39628.8 Da PI: 9.6288

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023871731.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.9	4.7e-18	31	76	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l ++v+q+G +W++Ia++++ gR++k+c++rw++ XP_023871731.1 31 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQ-GRSGKSCRLRWFNQ 76 899***************************.*********996 PP
2	Myb_DNA-binding	55.7	1.1e-17	83	126	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eE+++l+ a++ +G++ W++Iar ++ gRt++ +k++w+ XP_023871731.1 83 RRPFSEEEEDRLLAAHRIHGNK-WALIARLFP-GRTENAVKNHWHV 126 679*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence
MSNNSIARPA MEDSAGAAGS SDDAKSTSCP RGHWRPAEDE KLRQLVEQYG AQNWNSIAEK 60 LQGRSGKSCR LRWFNQLDPR INRRPFSEEE EDRLLAAHRI HGNKWALIAR LFPGRTENAV 120 KNHWHVIMAR KQREQSKLCG KRTYQEVNYN YSKTSSTNFL GRKPISQGDH LSSSSRAGSE 180 STSRIFEFRN PTKERIFADS PSSSSLSWNF ASLPTVSSNS SSLELFMRRQ GRACFNSSSN 240 NFINSECSKR SDQYLHRYHP NSSVHHGSYQ GSTTYGLVPN YTKVVPSPFG CFNLGSDYET 300 NGRNRRELVS FCNNSPTLTK LRATAEHEQG DESIEHKDIP FIDFLGVGIS S

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence

MSNNSIARPA MEDSAGAAGS SDDAKSTSCP RGHWRPAEDE KLRQLVEQYG AQNWNSIAEK  60
LQGRSGKSCR LRWFNQLDPR INRRPFSEEE EDRLLAAHRI HGNKWALIAR LFPGRTENAV  120
KNHWHVIMAR KQREQSKLCG KRTYQEVNYN YSKTSSTNFL GRKPISQGDH LSSSSRAGSE  180
STSRIFEFRN PTKERIFADS PSSSSLSWNF ASLPTVSSNS SSLELFMRRQ GRACFNSSSN  240
NFINSECSKR SDQYLHRYHP NSSVHHGSYQ GSTTYGLVPN YTKVVPSPFG CFNLGSDYET  300
NGRNRRELVS FCNNSPTLTK LRATAEHEQG DESIEHKDIP FIDFLGVGIS S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17950.1	4e-65	MYB family protein