PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023870879.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 480aa MW: 52669.3 Da PI: 9.0296

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023870879.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.8	4.3e-06	29	51	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykCp C+k F r ++ +rHirtH XP_023870879.1 29 YKCPLCDKAFHRLEHQTRHIRTH 51 9*********************9 PP
2	zf-C2H2	18.6	5e-06	58	81	2	23
EET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirtH 23 C+ C+k+Fsr+++L+rH r H XP_023870879.1 58 ACQfpGCTKRFSRSDELTRHSRIH 81 68888****************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence
MATTAMTMPS PGVNISNTDE HRPDLPRPYK CPLCDKAFHR LEHQTRHIRT HTGEKPHACQ 60 FPGCTKRFSR SDELTRHSRI HNNPNSRRGN KQHVAAAAAA AAAGLQSTMY DNQASLQQLS 120 QMSQLNQLNH VNQMQQLNQL NQMNQMGANT GQPIQLPSNP LVQHHMGHMN TQMGQTSNTS 180 SPMPLPQMMP PPPKTSRSTP TSQLNSPDVS PPHSYSATYL STPGSYTTRN NSGDISPAQG 240 GYHRPMDINL LATAASQVER ENNHPSQIPN HHLSLPSRQP YTPSPYHHPY GSGRMPSLSS 300 YHYSSHPTSQ PMSRSHSHED DDPYQHRASK KSRPGSPQST APPSPEFSHE STSPTPDHTP 360 LATPSHSPRL RPQFFNNGVQ LPTLHHLSLH NQPPPALAPV EPAADGHQPY VPTHHSGLRI 420 SEIMEAGDGA QRKLPVPIVT GPKDGIYTKI SELINPGSRG SSGENSAQHS EAGNDLHERM

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence

MATTAMTMPS PGVNISNTDE HRPDLPRPYK CPLCDKAFHR LEHQTRHIRT HTGEKPHACQ  60
FPGCTKRFSR SDELTRHSRI HNNPNSRRGN KQHVAAAAAA AAAGLQSTMY DNQASLQQLS  120
QMSQLNQLNH VNQMQQLNQL NQMNQMGANT GQPIQLPSNP LVQHHMGHMN TQMGQTSNTS  180
SPMPLPQMMP PPPKTSRSTP TSQLNSPDVS PPHSYSATYL STPGSYTTRN NSGDISPAQG  240
GYHRPMDINL LATAASQVER ENNHPSQIPN HHLSLPSRQP YTPSPYHHPY GSGRMPSLSS  300
YHYSSHPTSQ PMSRSHSHED DDPYQHRASK KSRPGSPQST APPSPEFSHE STSPTPDHTP  360
LATPSHSPRL RPQFFNNGVQ LPTLHHLSLH NQPPPALAPV EPAADGHQPY VPTHHSGLRI  420
SEIMEAGDGA QRKLPVPIVT GPKDGIYTKI SELINPGSRG SSGENSAQHS EAGNDLHERM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	1e-07	C2H2 family protein