PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026460815.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

AP2

Protein Properties

Length: 512aa MW: 56782.6 Da PI: 6.1975

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026460815.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	46.1	1.2e-14	180	239	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +++Aa+a++ a++k++g XP_026460815.1 180 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEDKAARAYDLAALKYWG 239 57*****************666664477446******99***********98 PP
2	AP2	47.3	5.3e-15	282	333	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_026460815.1 282 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 333 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 512 aa Download sequence
MDTSHQNWLG FSLSNAQYHE QTSSSPSVVP DHQQQQQFFQ TLNATSFPRD ENENDGSTNL 60 SMYNFDRKLE DFLGVSSTNN THESADNNSN KNNNSTNSST ADQYGIITYD SELKSIASSF 120 LRGYTTDNNH YQNPSLDHHD LETTNSTGTT TAMVAAPLPV EVTSDAVSKK SVDNFGQRTS 180 IYRGVTRHRW TGRYEAHLWD NSCRREGQSR KGRQVYLGGY DKEDKAARAY DLAALKYWGP 240 TTSTNFPVTN YEKEIEDMTN MTRQEFVASL RRKSSGFSRG ASIYRGVTRH HQHGRWQARI 300 GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGLNAVTNF DMSRYDVKSI ANSNLPIGGI 360 TGSSSKTTKA IINSDSISDD RSNDGGHSDD RDFSSTTLSF GLPIKQDPSS TDYWSLVNGS 420 GQNNGVTNIL HQQTSSHDQG NITTGNMFFN GGFVHQLQQQ EQQCVMSSSS PMSYDGSAAG 480 YGGEWVLAQP PLVYQTGKPN LSVFQTPIYG ME

Sequence ? help Back to Top

Protein Sequence Length: 512 aa Download sequence

MDTSHQNWLG FSLSNAQYHE QTSSSPSVVP DHQQQQQFFQ TLNATSFPRD ENENDGSTNL  60
SMYNFDRKLE DFLGVSSTNN THESADNNSN KNNNSTNSST ADQYGIITYD SELKSIASSF  120
LRGYTTDNNH YQNPSLDHHD LETTNSTGTT TAMVAAPLPV EVTSDAVSKK SVDNFGQRTS  180
IYRGVTRHRW TGRYEAHLWD NSCRREGQSR KGRQVYLGGY DKEDKAARAY DLAALKYWGP  240
TTSTNFPVTN YEKEIEDMTN MTRQEFVASL RRKSSGFSRG ASIYRGVTRH HQHGRWQARI  300
GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGLNAVTNF DMSRYDVKSI ANSNLPIGGI  360
TGSSSKTTKA IINSDSISDD RSNDGGHSDD RDFSSTTLSF GLPIKQDPSS TDYWSLVNGS  420
GQNNGVTNIL HQQTSSHDQG NITTGNMFFN GGFVHQLQQQ EQQCVMSSSS PMSYDGSAAG  480
YGGEWVLAQP PLVYQTGKPN LSVFQTPIYG ME

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57390.1	1e-140	AP2 family protein