PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_026458962.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 249aa MW: 28571.9 Da PI: 4.3917 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 64.4 | 1.2e-20 | 21 | 65 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 ++i++ks+ qvtfskRr+g++KKA ELSvL++ ++a+i fs+ g+ XP_026458962.1 21 EKIKDKSKLQVTFSKRRKGLFKKATELSVLTGSQIALIAFSPAGR 65 579***************************************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence |
MMMEMKKQRP GGDGRKKIKI EKIKDKSKLQ VTFSKRRKGL FKKATELSVL TGSQIALIAF 60 SPAGRPYVCG NPDLILDRFL NNINGEAREI QKDDDDEQQR RCLEVERELE AEKKRGFLLE 120 SLVNCDLGPD NDKFWWNTYV DGLSLDELMQ MRSDMEQLQK CVTKRSHDLQ MTSNNTASSS 180 SSSSYEDKSL ALMTIPSGNE IVDDDYQNEE MVNELLFDFD SQEYEFGIGN TTSTDQEEIT 240 ADIFSDDYY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 2e-21 | M-type_MADS family protein |