PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026456878.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family ARF
Protein Properties Length: 938aa    MW: 102987 Da    PI: 5.3313
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026456878.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.43.3e-24156257199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae+       ++++++ ++l++ d++ +sW++++iyr++++r++lt+GW+ Fv +++Lk+gD v+F +d  ++
  XP_026456878.1 156 FCKTLTASDTSTHGGFSVPRRAAEKLfppldySMQPPT-QELIVHDLHDNSWTFRHIYRGQPKRHLLTTGWSVFVGSKRLKAGDAVLFIRD--ER 247
                     99*********************999*****9555554.49************************************************54..56 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l+v+v+r+
  XP_026456878.1 248 SQLMVGVRRA 257
                     666*****97 PP
2Auxin_resp106.33.6e-35282365183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+++YnPra++seFv+++ +++kal+ ++vs+GmRf m++ete+s +rr++Gtvvg+sdld +rWpnSkW +L+
  XP_026456878.1 282 AAHAAANRSPFTIFYNPRACPSEFVIPLTRFQKALYgTQVSIGMRFGMMLETEESGKRRYMGTVVGISDLDHLRWPNSKWCNLQ 365
                     79**********************************9*******************************************9886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 938 aa     Download sequence    
MGSVIEEKIK TTSAATAGLI NMAAQPTNTL LEEMKALKEF QDQSEAKKSI NSELWHACAG  60
PLVSLPQTGS LVLYFPQGHS EQVAVSTKRA ATSQIPNYPG LPSQLTCQVH NVTLHCDKET  120
DEIFAQMTLQ PVNSEKDVFP FPDFGVKINK HPTEFFCKTL TASDTSTHGG FSVPRRAAEK  180
LFPPLDYSMQ PPTQELIVHD LHDNSWTFRH IYRGQPKRHL LTTGWSVFVG SKRLKAGDAV  240
LFIRDERSQL MVGVRRANHQ QTNLPSSVLS ADSMHFGVLA AAAHAAANRS PFTIFYNPRA  300
CPSEFVIPLT RFQKALYGTQ VSIGMRFGMM LETEESGKRR YMGTVVGISD LDHLRWPNSK  360
WCNLQVEWDE AGCGDKQNRV SLWDIETPES LFIFPSLTSN LKRPVHSGFG ENDWGNLFKR  420
PFARGPENGT GAFSYSSFPS LLKPPAAGPI GAMSAGYLPP CVTRGTPLLV GESSVKPFAS  480
QKSQFLSIDG TSLQNHNSCQ NILDVPQILK SNLLPQTHAR ENINPPFKVE SQSSPKPQSE  540
KPETRPVVVS DQLNQPASSS KCTEDKLDGS MNSHTLVNQM LHPNQGMLLP QTSQQLEPNT  600
LLQHQIDTLP FDASNATGLL PYPMNLSSSQ YLDNDDWMLH SGQSLAGILR SPALPSGCGL  660
EDLPMLYSEM GNVAATSLGQ ETWASQLNYL RYLSQEQELT PCLQRLPTTL QGFSNSGVGL  720
KDLSEDSKNQ CEIYSVHFES SNGGSTIIDP SVSSTAFDGI GSLGIEGFQS SNCLVGNFSS  780
NQDVQSQITT ASMVDSQAFS LQELQDNSGG TSSSNIDLDD TGLLQNGSWQ QISPPLRTYT  840
KVQKVGSVGR SIDVTRFKNY DDLRSAIACM FGLDGMLDDP RGSSWKLVYV DYENDVLLVG  900
DDPWEEFVSC VRCIRILSPS EVQQMSEDGL NLLSNTVV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein