PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026448131.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C3H

Protein Properties

Length: 440aa MW: 48142.3 Da PI: 7.7388

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026448131.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.8	1.2e-10	43	68	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C ++ rtG C yG++C+F+H+ XP_026448131.1 43 PGEPDCIYYIRTGLCGYGNNCRFNHP 68 5789*********************8 PP
2	zf-CCCH	19.8	1.4e-06	91	107	11	27
GTS--TTTTT-SS-SSS CS zf-CCCH 11 rtGtCkyGdrCkFaHgp 27 +tGtC++G +Ck++H++ XP_026448131.1 91 QTGTCRFGVTCKYNHPR 107 79*************96 PP
3	zf-CCCH	34.3	4.1e-11	128	152	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C++++rtG CkyG CkF+H++ XP_026448131.1 128 EKPCPHYMRTGVCKYGFACKFNHPQ 152 689********************97 PP
4	zf-CCCH	39.3	1.1e-12	278	303	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tGtCk+G++Ck++H++ XP_026448131.1 278 DQPECQYYMKTGTCKFGPTCKYHHPR 303 689*********************96 PP
5	zf-CCCH	31.9	2.3e-10	323	348	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C f++ +G+Ck+G +Ck+ H+ XP_026448131.1 323 PGQAICTFYSLYGICKFGLSCKYDHP 348 5789*********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence
MPDSWKVKIN ASPDNLQEAM WRLKIQAQNG VVVANSNLYP DRPGEPDCIY YIRTGLCGYG 60 NNCRFNHPSY PGQVAQYRGE LPERDGLPDC QTGTCRFGVT CKYNHPRDKD DARKIQLNML 120 GLPIRQEEKP CPHYMRTGVC KYGFACKFNH PQPAAVGSLP PVTGNASFGS TGSSVAPPLS 180 GLPYVGGIPA WTLPTTPYLS GHPMQGPQAY MPVVLSSSQG IITAPQGWTY SETANPVSST 240 NVLGSNFIYT SKHQGELGIN GQVHMLQTPA PQFPERPDQP ECQYYMKTGT CKFGPTCKYH 300 HPRERTAPLA TSTLSPYGLP LRPGQAICTF YSLYGICKFG LSCKYDHPLT GLYNYNLGMP 360 ALSIPDPTFS YNRISTLAGS EEKSPSKSSI SLSDQNEETD TTSIKHQCMD AKTSEEPKQQ 420 AVSSVNTSTT SLQLPLDASE

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence

MPDSWKVKIN ASPDNLQEAM WRLKIQAQNG VVVANSNLYP DRPGEPDCIY YIRTGLCGYG  60
NNCRFNHPSY PGQVAQYRGE LPERDGLPDC QTGTCRFGVT CKYNHPRDKD DARKIQLNML  120
GLPIRQEEKP CPHYMRTGVC KYGFACKFNH PQPAAVGSLP PVTGNASFGS TGSSVAPPLS  180
GLPYVGGIPA WTLPTTPYLS GHPMQGPQAY MPVVLSSSQG IITAPQGWTY SETANPVSST  240
NVLGSNFIYT SKHQGELGIN GQVHMLQTPA PQFPERPDQP ECQYYMKTGT CKFGPTCKYH  300
HPRERTAPLA TSTLSPYGLP LRPGQAICTF YSLYGICKFG LSCKYDHPLT GLYNYNLGMP  360
ALSIPDPTFS YNRISTLAGS EEKSPSKSSI SLSDQNEETD TTSIKHQCMD AKTSEEPKQQ  420
AVSSVNTSTT SLQLPLDASE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32930.1	3e-90	C3H family protein